Pairwise Alignments

Query, 1089 a.a., hypothetical protein from Variovorax sp. SCN45

Subject, 857 a.a., chaperone protein ClpB from Vibrio cholerae E7946 ATCC 55056

 Score =  218 bits (556), Expect = 1e-60
 Identities = 151/423 (35%), Positives = 226/423 (53%), Gaps = 37/423 (8%)

Query: 373 QKVQQRDRRFADLFRVIRVDPPPREAAIRI------------VAWRRAELERQHECRISA 420
           +++Q+++R +A+L  V + +         I            VA R  +L R  E  +  
Sbjct: 446 EELQEKERDYAELEEVWKAEKAALSGTQHIKAALEQARMDLEVARRAGDLNRMSE--LQY 503

Query: 421 AAVAELLKMERRFAADEVLPGSAIRVLDRLAVRHARGEVGRAEVLAAYTAAYHFREKLFS 480
             + EL K     A  E+         +   +R+   +   AEVL+  T      + L +
Sbjct: 504 GRIPELEKQLDLAAQAEMQ--------EMTLLRNKVTDAEIAEVLSKQTGI-PVSKMLEA 554

Query: 481 RQIGLAPAEAAAHFAARLIGQPEARAQLVDVIALIKSGLAAPGKPLSSLLFIGPTGVGKS 540
            +  L   E   H   R+IGQ EA   + + I   ++GL+ P +P+ S LF+GPTGVGK+
Sbjct: 555 EKEKLLRMEDVLH--KRVIGQKEAVEVVANAIRRSRAGLSDPNRPIGSFLFLGPTGVGKT 612

Query: 541 EAAKLLADYLFEDEGGLVRFDMNEYVDGDATGRLIGD-----AYRPDGQLTAAVRQRRAC 595
           E  K LA++LF+ E  +VR DM+E+++  +  RL+G       Y   G LT AVR++   
Sbjct: 613 ELCKTLANFLFDSEDAMVRVDMSEFMEKHSVARLVGAPPGYVGYEEGGYLTEAVRRKPYS 672

Query: 596 VLLLDEIEKAHPSVHDLLLQVLGEGRLTDALGRTTDFSQCVVVLTSNLGAAAASRHTGFV 655
           V+LLDE+EKAHP V ++LLQVL +GRLTD  GRT DF   VV++TSNLG++    +  F 
Sbjct: 673 VILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSSRIQEN--FA 730

Query: 656 RQE-ADVAHTYREAVERFFRPEFLNRIDQVVGFTPLGADDIAAIARLQLERVLARDGFVR 714
           R +   +     + V + FRPEFLNR+D+ V F PLG + I +IA +QL R+  R     
Sbjct: 731 RLDYQGIKEQVMDVVSKHFRPEFLNRVDESVVFHPLGQEHIKSIASIQLARL--RQRLAE 788

Query: 715 RLTFLNVSAQALDHLARLGHDETLGARALKRGIERALTQPIAQRLASSH--SGQPMLLDV 772
           R   L V  +ALD +A +G D   GAR LKR I++ +  P+A+ + +     G P+LL V
Sbjct: 789 RDYQLEVDDEALDLIAHVGFDPVYGARPLKRAIQQNVENPLAKSILAGKFLPGSPILLSV 848

Query: 773 SFG 775
             G
Sbjct: 849 KDG 851



 Score = 72.8 bits (177), Expect = 1e-16
 Identities = 49/205 (23%), Positives = 99/205 (48%), Gaps = 9/205 (4%)

Query: 247 VLVGPRGAGKTALVHGALRQFMVSETGRDRAKLQKIWHLDPMRVISGMSVIGQWQRRMAV 306
           V++G  G GKTA+V G L Q +++    +  + +++  LD   +++G    G+++ R+  
Sbjct: 203 VIIGEPGVGKTAIVEG-LAQRIINNEVPEGLRGRRVLSLDMGALVAGAKYRGEFEERLKS 261

Query: 307 LLQHLQFRLRDDFRIARPDHLYCDNLVALLAIGKSSQNTLTLADVLRPLLEKRAFTMIGE 366
           +L  L    +++  I     L+ D L  ++  GK  + ++   ++L+P L +     +G 
Sbjct: 262 VLNEL---AKEEGNII----LFIDELHTMVGAGK-GEGSMDAGNMLKPALARGELHCVGA 313

Query: 367 ATPEAWQKVQQRDRRFADLFRVIRVDPPPREAAIRIVAWRRAELERQHECRISAAAVAEL 426
            T + +++  ++D      F+ + VD P  E  I I+   +   E  H   I+  A+   
Sbjct: 314 TTLDEYRQYIEKDPALERRFQKVLVDEPTVEDTIAILRGLKERYELHHHVEITDPAIVAA 373

Query: 427 LKMERRFAADEVLPGSAIRVLDRLA 451
             +  R+ +D  LP  AI ++D  A
Sbjct: 374 ASLSHRYISDRQLPDKAIDLIDEAA 398



 Score = 27.3 bits (59), Expect = 0.005
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 7/46 (15%)

Query: 221 QAILRDEAIEELGRAIYR-------PDGGAGAIVLVGPRGAGKTAL 259
           + I + EA+E +  AI R       P+   G+ + +GP G GKT L
Sbjct: 569 RVIGQKEAVEVVANAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTEL 614