Pairwise Alignments

Query, 1089 a.a., hypothetical protein from Variovorax sp. SCN45

Subject, 752 a.a., ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) from Shewanella loihica PV-4

 Score =  227 bits (579), Expect = 2e-63
 Identities = 164/526 (31%), Positives = 255/526 (48%), Gaps = 29/526 (5%)

Query: 247 VLVGPRGAGKTALVHGALRQFMVSETGRDRAKLQKIWHLDPMRVISGMSVIGQWQRRMAV 306
           +LVG  G GKTA+  G   + +  E     A    ++ LD   +++G    G +++R   
Sbjct: 210 LLVGEAGVGKTAIAEGLAYRIVNDEVPEVMADAT-VYSLDLGALLAGTKYRGDFEKRFKS 268

Query: 307 LLQHLQFRLRDDFRIARPDHLYCDNLVALLAIGKSSQNTLTLADVLRPLLEKRAFTMIGE 366
           LL+ L    +D   I     L+ D +  ++  G +S   +  +++L+PLL       +G 
Sbjct: 269 LLKELS---QDKHAI-----LFIDEIHTIIGAGAASGGVMDASNLLKPLLSSGHLRCMGS 320

Query: 367 ATPEAWQKVQQRDRRFADLFRVIRVDPPPREAAIRIVAWRRAELERQHECRISAAAVAEL 426
            T + +Q + ++DR  A  F+ + ++ P      +I+   +++ E  H  R + AA++  
Sbjct: 321 TTFQEYQSIFEKDRALARRFQKVDINEPSVAETTKILQGLKSKYEEHHGVRYTMAALSVA 380

Query: 427 LKMERRFAADEVLPGSAIRVLDRLAVRHA-------RGEVGRAEVLAAYTAAYHFREKLF 479
            ++  +   D  LP  AI V+D    R A       +  +G+AE+ +         EK  
Sbjct: 381 ARLADKHINDRHLPDKAIDVIDEAGARMAMQPASKRKKTIGQAEIESIIAKIARIPEKTV 440

Query: 480 SRQIGLAPAEAAAHFAARLIGQPEARAQLVDVIALIKSGLAAPGKPLSSLLFIGPTGVGK 539
           S            +    + GQ +A   L   I L +SGL+   KP+ S LF GPTGVGK
Sbjct: 441 SATDKDMLKNLERNLKMVVFGQDKAIEALSSAIRLSRSGLSGAHKPVGSFLFAGPTGVGK 500

Query: 540 SEAAKLLADYLFEDEGGLVRFDMNEYVDGDATGRLIGD-----AYRPDGQLTAAVRQRRA 594
           +E    LA  L      LVRFDM+EY++     RLIG       Y   G LT AV +   
Sbjct: 501 TEVTSQLASCLSLK---LVRFDMSEYMESHTVSRLIGAPPGYVGYDQGGLLTDAVIKNPH 557

Query: 595 CVLLLDEIEKAHPSVHDLLLQVLGEGRLTDALGRTTDFSQCVVVLTSNLGAAAASRHT-G 653
           CV+LLDEIEKAHP V++LLLQV+  G LTD  GR  DF    +V+T+N G     R + G
Sbjct: 558 CVVLLDEIEKAHPDVYNLLLQVMDHGTLTDNNGRKADFRHVTLVMTTNAGVQETVRKSIG 617

Query: 654 FVRQEADVAHTYREAVERFFRPEFLNRIDQVVGFTPLGADDIAAIARLQLERVLARDGFV 713
           F +Q  D +      + R F PEF NR+D+++ F  L    IA +    L  + A+    
Sbjct: 618 FKQQ--DHSQDALSEINRVFSPEFRNRLDEIIWFNHLDMTVIAKVVDKFLVELQAQ--LD 673

Query: 714 RRLTFLNVSAQALDHLARLGHDETLGARALKRGIERALTQPIAQRL 759
            +   L+VS  A   LA  G+D+ +GAR + R +   + +P+A  +
Sbjct: 674 EKSVVLDVSDDARTLLAEKGYDKAMGARPMARVVTEMIKRPLADEI 719