Pairwise Alignments

Query, 1067 a.a., ClpB protein from Variovorax sp. SCN45

Subject, 756 a.a., ATP-dependent Clp protease ATP-binding subunit ClpA from Vibrio cholerae E7946 ATCC 55056

 Score =  184 bits (466), Expect = 3e-50
 Identities = 146/535 (27%), Positives = 246/535 (45%), Gaps = 25/535 (4%)

Query: 210 LVVGAESSGKTALIHQYARERRDRAAGSPWETSA------ARLIQGLTRDGSWQQALTTL 263
           L+VG    GKTA+    A    +       + S         L+ G    G +++   ++
Sbjct: 214 LLVGEAGVGKTAIAEGLAWRIVEGNVPEVIQRSVIYSLDIGSLLAGTKYRGDFEKRFKSI 273

Query: 264 CRELAT-REVVLYVGHLAELFEVGQYQGNSISLGDALREPLARGQLMVLAEATPAELSQI 322
            ++L   ++ +L++  +  +   G   G  +   + ++  L+ G+L  +   T  E S I
Sbjct: 274 LKQLEKEKDAILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKLRCIGSTTYQEYSNI 333

Query: 323 DLRSPGFSALFQTLRLPELPEAEQERTMLAAVAALAAQHRVAVSPDAVSELIALQRRFSP 382
             +    S  FQ + + E    +  + ++       A H V  +  A+   + L  ++  
Sbjct: 334 FEKERALSRRFQKIDIVEPSLDDTTKILMGLKTKYEAHHDVRYTNKALRAAVELSAKYIN 393

Query: 383 YSGFPGKGIRFFEELILHVR----GQQGAVIGRDDALAAFCAETGMPRRMLDARLPLSLD 438
               P K I   +E     R     ++   +G  +  +       +P + + +     L 
Sbjct: 394 ERHLPDKAIDVIDEAGARARLMPASRRKKTVGVAEIESMVAKMARIPEKSVSSSDKDILK 453

Query: 439 EVDGFFRSRLFGQPEALSVVTNLLVATKAGLARGGKPIASMLLIGPTGVGKTETAKALAE 498
            +D   +  +FGQ  A+ V+T  +  T+AGL    KP+ S L  GPTGVGKTE    L++
Sbjct: 454 NLDQKMKMLVFGQDAAIDVLTEAIKLTRAGLGAEHKPVGSFLFAGPTGVGKTEVTLQLSK 513

Query: 499 FMFGDPRRMIRIDMSEYADPAAVLRLLGD----LGGDEG-VLIGAVRRQPFSVVLFDELE 553
            +  +   ++R DMSEY +  +V RL+G     +G D+G +L  AV + P SVVL DE+E
Sbjct: 514 LLGIE---LLRFDMSEYGERHSVSRLIGAPPGYVGYDQGGLLTDAVIKHPHSVVLLDEIE 570

Query: 554 KAHPSFFDLLLQVLGEGRLTGGDGLTANFCGSFVVMTSNLG-AEAMQRMPMGLGAVRGDP 612
           KAHP  F+LLLQV+  G LT  +G  A+F    +VMT+N G AE +++    +G ++ D 
Sbjct: 571 KAHPDIFNLLLQVMDNGTLTDNNGRKADFRNVILVMTTNAGVAETVKK---SIGLIQQDN 627

Query: 613 RAHFEQAVQQALRPELFNRIDHIVPFAPLSATERAPIFGREMTLLRKREGLLERSAELTL 672
                  +++   PE  NR+DHI+ F  L   ER      +  ++  +  L  R   L +
Sbjct: 628 SHDAMSEIKKVFTPEFRNRLDHIIWFNSLD--ERVIHQVVDKFIVELQAQLDARGVSLEV 685

Query: 673 DDDVAARLAALPGDERYGARDVQRVLRRQLLLPLAHALAPHAYVTPLAVRIGAGD 727
            +D    LA    D   GAR + RV++ QL  PLA+ L   + V    V++   D
Sbjct: 686 SEDARHWLAVKGYDREMGARPMGRVIQEQLKKPLANELLFGSLVDGGTVKVTLSD 740