Pairwise Alignments

Query, 1067 a.a., ClpB protein from Variovorax sp. SCN45

Subject, 857 a.a., chaperone protein ClpB from Vibrio cholerae E7946 ATCC 55056

 Score =  196 bits (498), Expect = 6e-54
 Identities = 123/318 (38%), Positives = 183/318 (57%), Gaps = 19/318 (5%)

Query: 421 ETGMP-RRMLDARLPLSLDEVDGFFRSRLFGQPEALSVVTNLLVATKAGLARGGKPIASM 479
           +TG+P  +ML+A     L  ++     R+ GQ EA+ VV N +  ++AGL+   +PI S 
Sbjct: 543 QTGIPVSKMLEAEKEKLL-RMEDVLHKRVIGQKEAVEVVANAIRRSRAGLSDPNRPIGSF 601

Query: 480 LLIGPTGVGKTETAKALAEFMFGDPRRMIRIDMSEYADPAAVLRLLGDLGG-----DEGV 534
           L +GPTGVGKTE  K LA F+F     M+R+DMSE+ +  +V RL+G   G     + G 
Sbjct: 602 LFLGPTGVGKTELCKTLANFLFDSEDAMVRVDMSEFMEKHSVARLVGAPPGYVGYEEGGY 661

Query: 535 LIGAVRRQPFSVVLFDELEKAHPSFFDLLLQVLGEGRLTGGDGLTANFCGSFVVMTSNLG 594
           L  AVRR+P+SV+L DE+EKAHP  F++LLQVL +GRLT G G T +F  + V+MTSNLG
Sbjct: 662 LTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLG 721

Query: 595 AEAMQRMPMGLGAVRGDPRAHFEQ---AVQQALRPELFNRIDHIVPFAPLSATERAPIFG 651
           +  +Q         R D +   EQ    V +  RPE  NR+D  V F PL       I  
Sbjct: 722 SSRIQE-----NFARLDYQGIKEQVMDVVSKHFRPEFLNRVDESVVFHPLGQEHIKSIAS 776

Query: 652 REMTLLRKREGLLERSAELTLDDDVAARLAALPGDERYGARDVQRVLRRQLLLPLAHALA 711
            ++  LR+R  L ER  +L +DD+    +A +  D  YGAR ++R +++ +  PLA ++ 
Sbjct: 777 IQLARLRQR--LAERDYQLEVDDEALDLIAHVGFDPVYGARPLKRAIQQNVENPLAKSIL 834

Query: 712 PHAYV--TPLAVRIGAGD 727
              ++  +P+ + +  G+
Sbjct: 835 AGKFLPGSPILLSVKDGN 852



 Score = 54.3 bits (129), Expect = 4e-11
 Identities = 51/213 (23%), Positives = 88/213 (41%), Gaps = 17/213 (7%)

Query: 204 RFARSVLVVGAESSGKTALIHQYARE---------RRDRAAGSPWETSAARLIQGLTRDG 254
           R   + +++G    GKTA++   A+           R R   S        L+ G    G
Sbjct: 197 RTKNNPVIIGEPGVGKTAIVEGLAQRIINNEVPEGLRGRRVLS---LDMGALVAGAKYRG 253

Query: 255 SWQQALTTLCRELATRE--VVLYVGHLAELFEVGQYQGNSISLGDALREPLARGQLMVLA 312
            +++ L ++  ELA  E  ++L++  L  +   G+ +G S+  G+ L+  LARG+L  + 
Sbjct: 254 EFEERLKSVLNELAKEEGNIILFIDELHTMVGAGKGEG-SMDAGNMLKPALARGELHCVG 312

Query: 313 EATPAELSQIDLRSPGFSALFQTLRLPELPEAEQERTMLAAV-AALAAQHRVAVSPDAVS 371
             T  E  Q   + P     FQ + + E P  E    +L  +       H V ++  A+ 
Sbjct: 313 ATTLDEYRQYIEKDPALERRFQKVLVDE-PTVEDTIAILRGLKERYELHHHVEITDPAIV 371

Query: 372 ELIALQRRFSPYSGFPGKGIRFFEELILHVRGQ 404
              +L  R+      P K I   +E    +R Q
Sbjct: 372 AAASLSHRYISDRQLPDKAIDLIDEAASSIRMQ 404