Pairwise Alignments

Query, 869 a.a., DNA gyrase subunit B (EC 5.99.1.3) from Variovorax sp. SCN45

Subject, 805 a.a., DNA gyrase subunit B from Vibrio cholerae E7946 ATCC 55056

 Score =  880 bits (2273), Expect = 0.0
 Identities = 466/845 (55%), Positives = 592/845 (70%), Gaps = 46/845 (5%)

Query: 29  NSYGEGSITILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIVVT 88
           N+Y   SI +L+GL+AVRKRPGMYIGDT DGTGLHH+VFEVVDNSIDEALAG+C DIVVT
Sbjct: 3   NNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVVT 62

Query: 89  IHSDNSISVTDNGRGIPTGVKMDDKHEPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGV 148
           IH DNS+SV+D+GRGIPT +  ++K     SAAE+ +T LHAGGKF+ NSYKVSGGLHGV
Sbjct: 63  IHEDNSVSVSDDGRGIPTEMHPEEKV----SAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 118

Query: 149 GVSCVNALSVMLRLVVRREGKIHELEFSRGFVQNRLLETVSGVEVSPMKIIGDTDKRGTE 208
           GVS VNALS  + L + R GKIH   +  G  Q            +P+ ++G+T++ GT 
Sbjct: 119 GVSVVNALSEKVLLTIYRGGKIHSQTYHHGVPQ------------APLAVVGETERTGTT 166

Query: 209 VHFLPDTQIFKENNDFHYEILSKRLRELSFLNNGVRIRLKDERT-GKEDDFSGAGGVRGF 267
           V F P  Q F  N +FHY+IL+KRLRELSFLN+GV I+L DER   K+D F   GG++ F
Sbjct: 167 VRFWPSAQTFT-NIEFHYDILAKRLRELSFLNSGVSIKLTDEREEDKKDHFMYEGGIQAF 225

Query: 268 VEFINKGKTVLHPNSFYAEGERPADTYGGIPGTHIGVEVAMQWNSGYNEQVLCFTNNIPQ 327
           V  +N+ KT +H   F+   ER            I VEVAMQWN G+ E + CFTNNIPQ
Sbjct: 226 VTHLNRNKTPIHEKVFHFNQEREDG---------ISVEVAMQWNDGFQENIYCFTNNIPQ 276

Query: 328 RDGGTHLTGLRAAMTRVINKYIEENEFAKKAKVEVTGDDMREGLCCVLSVKVPEPKFSSQ 387
           RDGGTHL G R A+TR +N Y+++  F+KKA+   +GDD REGL  V+SVKVP+PKFSSQ
Sbjct: 277 RDGGTHLAGFRGALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQ 336

Query: 388 TKDKLVSSEVRAPVEDIVGKLLTDYLQERPNDAKIICGKIVEAARAREAARKAREMTRRK 447
           TKDKLVSSEV++ VE  + + L D+L E P++AK +C KI++AARAREAARKAREMTRRK
Sbjct: 337 TKDKLVSSEVKSAVESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRK 396

Query: 448 GVLDGMGLPGKLADCQEKDPALCEVYLVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEK 507
           G LD  GLPGKLADCQEKDPAL E+Y+VEGDSAGGSAKQGR+RK QAILPL+GKILNVEK
Sbjct: 397 GALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 456

Query: 508 ARYEKLLTSNEILTMITALGTGIGRAGATTAGGGADDFNVAKLRYHRIIIMTDADVDGAH 567
           AR++K+L+S E+ T+ITALG GIGR          D++N  KLRYH IIIMTDADVDG+H
Sbjct: 457 ARFDKMLSSQEVATLITALGCGIGR----------DEYNPDKLRYHNIIIMTDADVDGSH 506

Query: 568 IRTLLLTFFYRQMPELVERGHIYIAQPPLYKVKVGKEEQYLKDGPALDAFLLKVALKDAR 627
           IRTLLLTFFYRQMPEL+ERG+IYIAQPPLYKVK GK+EQY+KD  A++ + + +A+  A 
Sbjct: 507 IRTLLLTFFYRQMPELIERGYIYIAQPPLYKVKKGKQEQYIKDEEAMNQYQVALAMDGAE 566

Query: 628 IETGGASSTTLSGDTLAELARKHQVAEAVIARLRNFMDAEALRAIADGVALDLDTTPAAE 687
           +    A +  L+G+ L +L +++  A  ++ R+        L  +     ++ +      
Sbjct: 567 LHV-NADAPALAGEPLEKLVQQYNAAIKLVERMSRRYPYAMLHELIYVPRINAELCADKA 625

Query: 688 ASAVALQAKLRELNTTGVPA---EVSSEFDARTDKPLLRISRRHHGNIKSSVLTQDFVHG 744
           A     Q  + +LN   V A    V  E +A  +  L +I  R HG     +L+ D ++ 
Sbjct: 626 AVEAWTQRLVEQLNAKEVGASQYSVLVEHNAELNVYLPKIQVRTHGVTHEYLLSADLINS 685

Query: 745 ADYAALAEAANTFRGLLSPEGALVKRGEGERAKEEKVDDFRQAMKWLISEAERATSRQRY 804
            +YA LA+ +    GL+   GA +KRGE    + + +  F  A+ WLI E+ R  S QRY
Sbjct: 686 KEYAKLADLSEALDGLIE-AGAFIKRGE----RVQPISSFAAALDWLIKESRRGLSIQRY 740

Query: 805 KGLGEMNPEQLWETTMDPTVRRLLRVQIDDAIEADRVFTMLMGDEVEPRREFIEQNALRA 864
           KGLGEMNP+QLWETTMDP  RR+++V I+DA+ AD +FT LMGD+VEPRR FIE NAL+ 
Sbjct: 741 KGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADELFTTLMGDQVEPRRAFIETNALKV 800

Query: 865 ANIDV 869
           AN+DV
Sbjct: 801 ANLDV 805