Pairwise Alignments

Query, 869 a.a., DNA gyrase subunit B (EC 5.99.1.3) from Variovorax sp. SCN45

Subject, 805 a.a., DNA gyrase subunit GyrB from Phaeobacter inhibens DSM 17395

 Score =  772 bits (1993), Expect = 0.0
 Identities = 438/851 (51%), Positives = 549/851 (64%), Gaps = 62/851 (7%)

Query: 27  ADNSYGEGSITILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIV 86
           A   YG  SI +L+GLEAVRKRPGMYIGDT DG+GLHH+V+EVVDN IDEALAGH D +V
Sbjct: 7   APAEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGHADRVV 66

Query: 87  VTIHSDNSISVTDNGRGIPTGVKMDDKHEPKRSAAEIALTELHAGGKFNQNSYKVSGGLH 146
           V IH+D+S+SV DNGRGIP G+      E   SAAE+ +T+LHAGGKF+ NSYKVSGGLH
Sbjct: 67  VKIHADSSVSVNDNGRGIPVGIH----EEEGVSAAEVIMTQLHAGGKFDSNSYKVSGGLH 122

Query: 147 GVGVSCVNALSVMLRLVVRREGKIHELEFSRGFVQNRLLETVSGVEVSPMKIIGDT-DKR 205
           GVGVS VNALS  L L + R+GK H   F RG     L            K++GD  D+ 
Sbjct: 123 GVGVSVVNALSDWLELRIWRDGKEHVARFERGDTAEHL------------KVVGDCGDQT 170

Query: 206 GTEVHFLPDTQIFKENNDFHYEILSKRLRELSFLNNGVRIRLKDERTGK--EDDFSGAGG 263
           GTEV FL  T  F  N ++ +E L KRLREL+FLN+GVRI L DER  +  E +    GG
Sbjct: 171 GTEVRFLASTDTFS-NLEYLFETLEKRLRELAFLNSGVRIILIDERPAERLEVELFYEGG 229

Query: 264 VRGFVEFINKGKTVLHPNSFYAEGERPADTYGGIPGTHIGVEVAMQWNSGYNEQVLCFTN 323
           V+ FV+++++ K+ +     Y  G+R            IGVEVAM WN  Y+E VL FTN
Sbjct: 230 VKEFVKYLDRSKSPVMEAPIYITGDRD----------EIGVEVAMWWNDSYHETVLPFTN 279

Query: 324 NIPQRDGGTHLTGLRAAMTRVINKYIEENEFAKKAKVEVTGDDMREGLCCVLSVKVPEPK 383
           NIPQRDGGTH+ G R A+TR IN Y + +  AKK KV  TGDD REGL CVLSVKVP+PK
Sbjct: 280 NIPQRDGGTHVAGFRGALTRTINNYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPK 339

Query: 384 FSSQTKDKLVSSEVRAPVEDIVGKLLTDYLQERPNDAKIICGKIVEAARAREAARKAREM 443
           FSSQTKDKLVSSEVR  VE +V + L ++ +E PN AK I GKI+EAA AREAARKARE+
Sbjct: 340 FSSQTKDKLVSSEVRPVVESLVNEKLAEWFEENPNQAKQIVGKIIEAALAREAARKAREL 399

Query: 444 TRRKGVLDGMGLPGKLADCQEKDPALCEVYLVEGDSAGGSAKQGRDRKFQAILPLRGKIL 503
           TRRK  +D   L GKL DC EKDP+  EV+LVEGDSAGGSA+ GRDR  QAILPLRGKIL
Sbjct: 400 TRRKTAMDVNYLAGKLKDCSEKDPSKTEVFLVEGDSAGGSAQTGRDRMTQAILPLRGKIL 459

Query: 504 NVEKARYEKLLTSNEILTMITALGTGIGRAGATTAGGGADDFNVAKLRYHRIIIMTDADV 563
           NVE+AR++++L S EI  ++ ALGTGIGR          D+FN+ KLRYH+I+IMTDADV
Sbjct: 460 NVERARFDRMLGSQEIGNLVMALGTGIGR----------DEFNIDKLRYHKIVIMTDADV 509

Query: 564 DGAHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKVKVGKEEQYLKDGPALDAFLLKVAL 623
           DGAHIRTLLLTFFYRQMPEL+E G++YIAQPPLYKV  GK E YLKD  ALD +L+   +
Sbjct: 510 DGAHIRTLLLTFFYRQMPELIEGGYLYIAQPPLYKVSRGKSEVYLKDQAALDEYLINQGV 569

Query: 624 KDARIETGGASSTTLSGDTLAELARKHQVAEAVIARL-----RNFMDAEALRAIADGVAL 678
             A ++ G  S   L G  LA +  + +  + V+        R+ ++  A+       A+
Sbjct: 570 DGAVLKLG--SGEELVGQDLARVVDEARQLKRVLDAFPTHYPRHILEQAAVAGAFVPGAV 627

Query: 679 DLDTTPAAEASAVALQAKLRELNTTGVPAEVSSEFDAR-TDKPLLRISRRHHGNIKSSVL 737
           D D    A+  A  L           +  E    +  R T    +R+SR   G  +   L
Sbjct: 628 DADLQGVADKVAQRLDL---------IALEYERGWRGRITQDHGIRLSRILRGVEELRTL 678

Query: 738 TQDFVHGADYAALAEAANTFRGLLSPEGALVKRGEGERAKEEKVDDFRQAMKWLISEAER 797
               +   +        N+ +        LV+R      + + +      +K ++ E E+
Sbjct: 679 DGPMLRSGEARKTGSFTNSLQETYGATATLVRRD-----RSQAIHGPLGLLKAILEEGEK 733

Query: 798 ATSRQRYKGLGEMNPEQLWETTMDPTVRRLLRVQIDDAIEADRVFTMLMGDEVEPRREFI 857
             + QRYKGLGEMNP+QLWETT+DP  R LL+V+++D +EAD +FT LMGD VEPRREFI
Sbjct: 734 GLALQRYKGLGEMNPDQLWETTLDPDARTLLQVRVEDMVEADDLFTKLMGDVVEPRREFI 793

Query: 858 EQNALRAANID 868
           ++NAL   N+D
Sbjct: 794 QKNALSVENLD 804