Pairwise Alignments

Query, 368 a.a., DNA polymerase III beta subunit (EC 2.7.7.7) from Variovorax sp. SCN45

Subject, 367 a.a., DNA polymerase III beta subunit (EC 2.7.7.7) from Pseudomonas fluorescens FW300-N2E2

 Score =  312 bits (799), Expect = 1e-89
 Identities = 167/364 (45%), Positives = 239/364 (65%), Gaps = 6/364 (1%)

Query: 8   QDKVLAALQSVAGIVERRHTLPILANVLIRKTGGQLQLTTSDLEIQI--RTTAELGGDEG 65
           ++ +L  LQ VAG+VERR TLP+L+NVL+   G QL LT +DLE+++  R   E   D G
Sbjct: 7   REALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLEEPADPG 66

Query: 66  NFTTTIGARKLIDILRTMPSDQTVSLESSASKLVLKGGKSRFTLQSLPAEDFPLVQEAAN 125
           + T  + ARKL+DI +++P+D  + ++    KLV+K G+SRFTL +LPA DFP V+E   
Sbjct: 67  SIT--VPARKLMDICKSLPNDALIDIKVDEQKLVVKAGRSRFTLSTLPANDFPTVEEGPG 124

Query: 126 FGPVFSVPQKTLKDLLSQVSFAMAVHDIRYYLNGILFVAEGKQLSLVATDGHRLAFSSAT 185
                S+ Q  L+ L+ + SFAMA  D+RYYLNG+L       +  VATDGHRLA  S  
Sbjct: 125 -SLTCSLDQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGVIRAVATDGHRLAMCSMQ 183

Query: 186 LDVEVP-RQEVILPRKTVLEMQRLLSDAEGAIEMQFANNQAKFSFGGMEFVTKLVEGKFP 244
            D+  P R +VI+PRK +LE+ RLL++ +G + +    +  + + G   F +KLV+GKFP
Sbjct: 184 ADIGQPDRHQVIVPRKGILELARLLTEPDGNVSIVLGQHHIRATTGEFTFTSKLVDGKFP 243

Query: 245 DYNRVIPKNHKNTVTLGRAPLLASLQRTAILTSEKFKGVRLNIEPGTLRIASNNAEQEEA 304
           DY RV+PK     V   R  L  +  RTAIL++EK++G+RL +  G L+I +NN EQEEA
Sbjct: 244 DYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLANGQLKIQANNPEQEEA 303

Query: 305 QDELDIDYGGDAIEIGFNVTYLIDALSNMDQDMVKLDLADSNSSALLTIPENASFKYVVM 364
           ++E+ ++Y G ++EIGFNV+YL+D L  M  + V+L L+DSNSSAL+   +N    YVVM
Sbjct: 304 EEEVGVEYNGGSLEIGFNVSYLLDVLGVMTTEQVRLILSDSNSSALVQESDNDDSAYVVM 363

Query: 365 PMRI 368
           PMR+
Sbjct: 364 PMRL 367



 Score = 33.5 bits (75), Expect = 9e-06
 Identities = 32/177 (18%), Positives = 73/177 (41%), Gaps = 8/177 (4%)

Query: 130 FSVPQKTLKDLLSQVSFAMAVHDIRYYLNGILFVAEGKQLSLVATDGHRLAFSSATLDVE 189
           F++ ++ L   L  V+  +        L+ +L V EG+QLSL  TD          L+  
Sbjct: 3   FTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLEEP 62

Query: 190 VPRQEVILPRKTVLEMQRLLSDAEGAIEMQFANNQAKFSFGGMEFVTKLVEGKFPDYNRV 249
                + +P + ++++ + L + +  I+++    +     G   F    +     D+  V
Sbjct: 63  ADPGSITVPARKLMDICKSLPN-DALIDIKVDEQKLVVKAGRSRFTLSTLPAN--DFPTV 119

Query: 250 IPKNHKNTVTLGRAPLLASLQRTAILTSEK-----FKGVRLNIEPGTLRIASNNAEQ 301
                  T +L ++ L   ++RT+   +++       G+ L +  G +R  + +  +
Sbjct: 120 EEGPGSLTCSLDQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGVIRAVATDGHR 176