Pairwise Alignments

Query, 368 a.a., DNA polymerase III beta subunit (EC 2.7.7.7) from Variovorax sp. SCN45

Subject, 366 a.a., DNA polymerase III subunit beta from Vibrio cholerae E7946 ATCC 55056

 Score =  277 bits (708), Expect = 4e-79
 Identities = 140/358 (39%), Positives = 232/358 (64%), Gaps = 1/358 (0%)

Query: 11  VLAALQSVAGIVERRHTLPILANVLIRKTGGQLQLTTSDLEIQIRTTAELGGDEGNFTTT 70
           ++  LQ V+G +  R +LPIL N+L++    QL +T +DLE+++ +   L G+    + T
Sbjct: 10  LIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLEGEFEAGSIT 69

Query: 71  IGARKLIDILRTMPSDQTVSLESSASKLVLKGGKSRFTLQSLPAEDFPLVQEAANFGPVF 130
           + ARK +DI R +P    +++     ++ ++ G+SRF+L +LPA DFP +++  +   V 
Sbjct: 70  VPARKFLDICRGLPDSAVITVLLEGDRIQVRSGRSRFSLATLPASDFPNIEDWQSEVQV- 128

Query: 131 SVPQKTLKDLLSQVSFAMAVHDIRYYLNGILFVAEGKQLSLVATDGHRLAFSSATLDVEV 190
           S+ Q  L+ L+ +  F+MA  D+RYYLNG+LF  +G  L  VATDGHR+A + A L  + 
Sbjct: 129 SLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLRSVATDGHRMAVAQAQLGADF 188

Query: 191 PRQEVILPRKTVLEMQRLLSDAEGAIEMQFANNQAKFSFGGMEFVTKLVEGKFPDYNRVI 250
            ++++I+PRK VLE+ +LL   E  + +Q  ++  +       F +KLV+G+FPDY RV+
Sbjct: 189 AQKQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTSKLVDGRFPDYRRVL 248

Query: 251 PKNHKNTVTLGRAPLLASLQRTAILTSEKFKGVRLNIEPGTLRIASNNAEQEEAQDELDI 310
           P++   T+  G   L  +  R AIL++EKF+GVR+N+    +RI +NN EQEEA++ LD+
Sbjct: 249 PQHTSKTLQTGCEELRQAFSRAAILSNEKFRGVRVNLADNGMRITANNPEQEEAEELLDV 308

Query: 311 DYGGDAIEIGFNVTYLIDALSNMDQDMVKLDLADSNSSALLTIPENASFKYVVMPMRI 368
            + G+ IEIGFNV+Y++D L+ +  D V++ ++D+N+SAL+   ++ S  YVVMP+R+
Sbjct: 309 SFEGEPIEIGFNVSYILDVLNTLRCDNVRVSMSDANASALVENVDDDSAMYVVMPIRL 366



 Score = 40.0 bits (92), Expect = 1e-07
 Identities = 51/226 (22%), Positives = 90/226 (39%), Gaps = 9/226 (3%)

Query: 130 FSVPQKTLKDLLSQVSFAMAVHDIRYYLNGILFVAEGKQLSLVATDGHRLAFSSATLDVE 189
           F++ +  L   L QVS  +        L  +L   E  QLS+ ATD      S  TL+ E
Sbjct: 3   FTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLEGE 62

Query: 190 VPRQEVILPRKTVLEMQRLLSDAEGAIEMQFANNQAKFSFGGMEFVTKLVEGKFPDYNRV 249
                + +P +  L++ R L D+   I +    ++ +   G   F   L      D+  +
Sbjct: 63  FEAGSITVPARKFLDICRGLPDS-AVITVLLEGDRIQVRSGRSRF--SLATLPASDFPNI 119

Query: 250 IPKNHKNTVTLGRAPLLASLQRTAILTSEK-----FKGVRLNIEPGTLR-IASNNAEQEE 303
                +  V+L +A L   +++T    + +       G+   I+  TLR +A++      
Sbjct: 120 EDWQSEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLRSVATDGHRMAV 179

Query: 304 AQDELDIDYGGDAIEIGFNVTYLIDALSNMDQDMVKLDLADSNSSA 349
           AQ +L  D+    I +       +  L +  +  V L +  SN  A
Sbjct: 180 AQAQLGADFAQKQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRA 225