Pairwise Alignments

Query, 245 a.a., 16S rRNA (uracil(1498)-N(3))-methyltransferase (EC 2.1.1.193) from Variovorax sp. SCN45

Subject, 239 a.a., Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) from Pseudomonas fluorescens FW300-N2E2

 Score =  162 bits (410), Expect = 6e-45
 Identities = 95/243 (39%), Positives = 133/243 (54%), Gaps = 11/243 (4%)

Query: 1   MPRFHCSVPLTAGASLALPAGAARHV-QVLRMQPGDALTLFDGAGGEYAATVERMGRSDV 59
           + RF    PL+ G    LP   A ++ +VLRM  GDA+ +FDG+G E+  T+  +G+  V
Sbjct: 3   LSRFFIDAPLSLGDH-ELPEAQAHYIGRVLRMAEGDAVQVFDGSGQEFRGTLAEVGKKRV 61

Query: 60  AVTVGAHQPVEREASRAVHLAVGMPANERMDWLVEKATELGVSSIQPLATAHGVLRLSGE 119
            V +      + E+   +HL  G+   ERMDW ++KATELGVS I P+ +    +RL  E
Sbjct: 62  RVQLDEQFAGQPESPLRIHLGQGLSRGERMDWAIQKATELGVSEITPIFSERCEVRLKDE 121

Query: 120 RAEKKRAHWEAIAVAACEQCGRNRVPVIHPVQTFSGWIAAQQQQGADTAERLVLSLADGT 179
           RA+K+  HW  +A++ACEQCGR+ VPVIHP    + W+         T   L L L    
Sbjct: 122 RADKRLLHWRQVAISACEQCGRSSVPVIHPPLLLADWL-------KQTEAELKLVLHPVA 174

Query: 180 RGIATVQPDDGRGVLVLSGPEGGLSGTEEQEAIARGFAPITLGSRVLRAETAALAALVSL 239
             +A+   D    +  L GPEGGLS  E ++A   G+    LG RVLR ETA + AL   
Sbjct: 175 EPLAS--HDKPSTLAFLIGPEGGLSDAEVEQAKTAGYQAARLGPRVLRTETAPVVALAVA 232

Query: 240 AEL 242
            +L
Sbjct: 233 QQL 235