Pairwise Alignments

Query, 245 a.a., 16S rRNA (uracil(1498)-N(3))-methyltransferase (EC 2.1.1.193) from Variovorax sp. SCN45

Subject, 243 a.a., hypothetical protein from Synechococcus elongatus PCC 7942

 Score =  100 bits (249), Expect = 3e-26
 Identities = 80/234 (34%), Positives = 124/234 (52%), Gaps = 15/234 (6%)

Query: 13  GASLALPAGAARHVQ-VLRMQPGDALTLFDGAGGEYAATVERMGRSDVAVTVGAHQPVER 71
           G   +L A    ++Q VLR++PGD   + DG GG + A    +G  D    VGA  PV  
Sbjct: 17  GDRWSLTADQRHYLQRVLRLKPGDRCAVIDGQGGLWTA---ELGDRDQLFPVGA-VPVLP 72

Query: 72  EASRAVHLAVGMPANERMDWLVEKATELGVSSIQPLATAHGVLRLSGERAEKKRAHWEAI 131
            A   + L   +P  +  D ++ +ATELGV++IQP+ +    +R   ++ ++    W  I
Sbjct: 73  PAQPRLTLIQSLP-KQGFDEVIRQATELGVTTIQPVISDRSQVRPEAQKTDR----WRKI 127

Query: 132 AVAACEQCGRNRVPVIHPVQTFSGWIAAQQQQGADTAERLVLSLADGTRGIATVQPDDGR 191
           A+ A EQ  R  +P + P++ +S  IA   Q  AD+   + L+       +  +Q     
Sbjct: 128 AIEASEQSERLYLPQLEPIRLWSEAIA---QIPADSLRCICLARRSLPNLLPWLQAQPAW 184

Query: 192 GVLVLS-GPEGGLSGTEEQEAIARGFAPITLGSRVLRAETAALAALVSLAELQA 244
             L ++ GPEGG S  E ++AIA G+ P++LGS +LRA TA + AL SLA+  A
Sbjct: 185 TDLAIAIGPEGGWSDAEIEQAIAVGWTPVSLGSSILRAVTAPIVAL-SLAQAVA 237