Pairwise Alignments

Query, 245 a.a., 16S rRNA (uracil(1498)-N(3))-methyltransferase (EC 2.1.1.193) from Variovorax sp. SCN45

Subject, 243 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score =  129 bits (324), Expect = 5e-35
 Identities = 87/244 (35%), Positives = 125/244 (51%), Gaps = 16/244 (6%)

Query: 1   MPRFHCSVPLTAGASLALPAGAARHV-QVLRMQPGDALTLFDGAGGEYAATVERMGRSDV 59
           +PR +          L L   AA HV +VLRM  G+ L LF+G G  Y   +    + +V
Sbjct: 3   IPRIYQLGNYDLNQQLMLDEEAAGHVGRVLRMGAGEQLELFNGDGHNYLTEIVTASKKNV 62

Query: 60  AVTVGAHQPVEREASRAVHLAVGMPANERMDWLVEKATELGVSSIQPLATAHGVLRLSGE 119
            V V + +  + E+   +HL   +   +RMD+ ++K+ ELGV++I PL +    ++L+GE
Sbjct: 63  EVRVLSKEANDNESPLNLHLGQVISRGDRMDFTLQKSVELGVNTITPLFSERCGVKLTGE 122

Query: 120 RAEKKRAHWEAIAVAACEQCGRNRVPVIHPVQTFSGWIAAQQQQGADTAERLVLSL---A 176
           R EKK   W+ I ++ACEQ GR+ VP + P      W         +  + L L+L   A
Sbjct: 123 RLEKKIQQWQKIVISACEQSGRSTVPEVRPAMQLDDWC-------GEATQALKLNLHPRA 175

Query: 177 D-GTRGIATVQPDDGRGVLVLSGPEGGLSGTEEQEAIARGFAPITLGSRVLRAETAALAA 235
           D G  G+    P     V +L GPEGGLS  E        F  + LG RVLR ETAAL A
Sbjct: 176 DHGINGLVMETP----RVRLLIGPEGGLSPQEIAMTETHAFTDVLLGPRVLRTETAALTA 231

Query: 236 LVSL 239
           + +L
Sbjct: 232 ISAL 235