Pairwise Alignments

Query, 245 a.a., 16S rRNA (uracil(1498)-N(3))-methyltransferase (EC 2.1.1.193) from Variovorax sp. SCN45

Subject, 243 a.a., conserved hypothetical protein TIGR00046 (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  132 bits (332), Expect = 6e-36
 Identities = 84/241 (34%), Positives = 127/241 (52%), Gaps = 10/241 (4%)

Query: 1   MPRFHCSVPLTAGASLALPAGAARHV-QVLRMQPGDALTLFDGAGGEYAATVERMGRSDV 59
           +PR +   PL     L L    A H+ +VLRM  G+ ++LF+G G +Y A +    +  V
Sbjct: 3   VPRIYQPQPLAVNQQLNLDEDGAAHIGKVLRMGNGEQISLFNGDGHDYLAEIIDAAKKSV 62

Query: 60  AVTVGAHQPVEREASRAVHLAVGMPANERMDWLVEKATELGVSSIQPLATAHGVLRLSGE 119
            V V + +    E+   +HL   +   +RM++ ++K+ ELGV++I PL +    ++LSGE
Sbjct: 63  TVKVLSCEANPSESPLNLHLGQVISRGDRMEFTIQKSVELGVNTITPLFSDRCGVKLSGE 122

Query: 120 RAEKKRAHWEAIAVAACEQCGRNRVPVIHPVQTFSGWIAAQQQQGADTAERLVLSL-ADG 178
           R +KK   W+ I ++ACEQ GR++VPV+ P      W        ++    L L+L    
Sbjct: 123 RLDKKIQQWQKIVISACEQSGRSQVPVVRPAMELQQWC-------SEPTSALKLNLHPRA 175

Query: 179 TRGIATVQPDDGRGVLVLSGPEGGLSGTEEQEAIARGFAPITLGSRVLRAETAALAALVS 238
             GI  +     R V +L GPEGGLS  E        F  + LG RVLR ETA+L A+ +
Sbjct: 176 AHGINGLDLSHTR-VRLLIGPEGGLSAEEIAMTETHQFTDVLLGPRVLRTETASLTAITA 234

Query: 239 L 239
           L
Sbjct: 235 L 235