Pairwise Alignments

Query, 334 a.a., Nucleoside ABC transporter, substrate-binding protein from Variovorax sp. SCN45

Subject, 363 a.a., Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein from Pseudomonas stutzeri RCH2

 Score =  140 bits (352), Expect = 6e-38
 Identities = 105/323 (32%), Positives = 157/323 (48%), Gaps = 15/323 (4%)

Query: 5   RQLIIRSVAIAAALAAGAPGLALAQQAKLKVAAVYTVPF-EQQWVGRIHKALKAAEAR-- 61
           R+ ++R++A A   +A     A +    LKV  VY  P  +  W  +  +  K  E +  
Sbjct: 6   RKTLLRALAAAIGFSAALTTAAASAADPLKVGFVYIGPIGDHGWTYQHEQGRKYMEEKLG 65

Query: 62  GEIEYKATENV-SNADYERVMREYATGGNQLILGEVFGVEAAARKVAKDFPKVAFLMGSS 120
            +++    ENV   AD ERV+R  A     LI    FG      KVAK FPKV F   + 
Sbjct: 66  DKVKTSFVENVPEGADAERVIRNMAKSDYDLIFTTSFGYMNPTLKVAKQFPKVTFEHATG 125

Query: 121 LKPQAPNFSVFDNYIQEPAYLSGMVAGGVTKTNRIGMVGGFPIPEVNRLMNAFMAGAKET 180
            K QA N   +     E  Y+ G +A  +TKT +IG +  FPIPEV R +N+      + 
Sbjct: 126 YK-QAKNVGTYLTRSYEGRYVGGFLAAKMTKTKKIGYIASFPIPEVIRDINSIQLALDKY 184

Query: 181 NPKVEFSVSFINSWFDPPKAKEAAFAMIDKGADVMYAERFGVS--DAAKEKGKLAIGNVI 238
           NP  E  V ++N+WFDP K  +AA A+ID+G DV++      +   AA+ +G  ++G   
Sbjct: 185 NPGTEIKVVWVNTWFDPGKEADAANALIDQGVDVIFQHTDSPAPIQAAERRGVYSVGYAS 244

Query: 239 DTQSQYPDTVVASALWNFEPAADHAIKLVKEGKFAAEDY-GVYAQMKHKGSELAPLGTFE 297
           D Q   P  V+ S + ++ P    + + V  G + +ED+ G  AQ     S   P+    
Sbjct: 245 DMQHFGPKAVLTSIVNDWGPHYTKSAEAVMAGTWKSEDFWGGLAQ----DSISLPISDL- 299

Query: 298 KKVPADIIAKVKAKQADILAGKF 320
             VPAD+  + +A  A I +G F
Sbjct: 300 --VPADVKTEAEAIIASIKSGDF 320