Pairwise Alignments

Query, 334 a.a., Nucleoside ABC transporter, substrate-binding protein from Variovorax sp. SCN45

Subject, 339 a.a., hypothetical protein from Sinorhizobium meliloti 1021

 Score =  128 bits (321), Expect = 2e-34
 Identities = 102/338 (30%), Positives = 157/338 (46%), Gaps = 16/338 (4%)

Query: 4   RRQLIIRSVAIAAALAAGAPGLALAQQAKLKVAAVYTVPFEQQWVGRIHKAL---KAAEA 60
           RR  I+ S+   A L +       A    LK+A V     +  W   +  AL   K A  
Sbjct: 7   RRTAILGSMG--AFLLSALDRTFAAGPTSLKIALVLESRTDIGWTRTLLDALEQVKQARP 64

Query: 61  RG-EIEYKATENVSNADYERVMREYATGGNQLILGEVFGVEAAARKVAKDFPKVAFLM-G 118
            G +I ++ T+ + N D E  MR YA GG   I+          +K++ +FP + F++ G
Sbjct: 65  DGLDISWEYTDPLWNDDAENAMRFYAEGGEYDIIWAHGRYSDQVKKLSAEFPDIMFVVTG 124

Query: 119 SSLKPQAPNFSVFDNYIQEPAYLSGMVAGGVTKTNRIGMVGGFPIPEVNRLMNAFMAGAK 178
           S   P   N       + EP+YL GM+AG  TK+  +G+VG F   +VN  +NAF+ GA+
Sbjct: 125 SGNLPLGANQYWLYKRLHEPSYLLGMLAGRTTKSGVVGLVGTFAADDVNDQINAFLDGAR 184

Query: 179 ETNPKVEFSVSFINSWFDPPKAKEAAFAMIDKGADV--MYAERFGVSDAAKEKGKLAIGN 236
              P V   VSFI SW D   A E A   I  GADV  M  + F      +E   +   N
Sbjct: 185 SVRPDVRHRVSFIGSWSDNALAAEHANVQIASGADVVFMLTDNF---KPCQEHRIICFAN 241

Query: 237 VIDTQSQYPDTVVASALWNFEPAADHAIKLVKEGKFAAEDYG----VYAQMKHKGSELAP 292
           + D     PD + +SA+ +++P     I    + K  A   G     +  M   G ++AP
Sbjct: 242 INDQSKLAPDAIASSAIIDWQPDIKWIISEWLKHKAGAPYDGNTEPKWFSMSQGGVDIAP 301

Query: 293 LGTFEKKVPADIIAKVKAKQADILAGKFTVKVDDGQPK 330
              F+ K+P  +  ++ A +  I++G+F V ++  + K
Sbjct: 302 YHDFDAKLPVAVKEELAATRQKIISGEFVVPLNTAEVK 339