Pairwise Alignments

Query, 334 a.a., Nucleoside ABC transporter, substrate-binding protein from Variovorax sp. SCN45

Subject, 364 a.a., hypothetical protein from Sinorhizobium meliloti 1021

 Score =  147 bits (371), Expect = 4e-40
 Identities = 113/342 (33%), Positives = 161/342 (47%), Gaps = 19/342 (5%)

Query: 4   RRQLIIRSVAIAAALAAGAPGLALAQQAKLKVAAVYTVPF-EQQWVGRIHKALKAA--EA 60
           RRQ +  S A   AL  G+       +  LK+  VY  P  E  W  +    + A   E 
Sbjct: 6   RRQFLRYSGATGVALGTGSLASFAGAEEPLKIGVVYVSPIAEIGWTKQHSLGVDAIKKEF 65

Query: 61  RGEIEYKATENV-SNADYERVMREYATGGNQLILGEVFGVEAAARKVAKDFPKVAFLMGS 119
             ++     +N+    D ERV RE A  GNQLI G  F      +KVA  FPK AF   S
Sbjct: 66  GDKVAITVIDNIFMPQDAERVFRELAASGNQLIFGTSFSHGTPMQKVAPRFPKTAFEHCS 125

Query: 120 SLKPQAPNFSVFDNYIQEPAYLSGMVAGGVTKTNRIGMVGGFPIPEVNRLMNAFMAGAKE 179
            +  +A N   F+    E  +++G   G ++K+ +IG +GGFPIP++    NA + GA+ 
Sbjct: 126 GIVHRA-NLGTFEAKYYEGTFVAGAAGGHMSKSGKIGFIGGFPIPDIVGPANALLLGAQS 184

Query: 180 TNPKVEFSVSFINSWFDPPKAKEAAFAMIDKGADV---MYAERFGVSDAAKEKGKLAIGN 236
            NP+V  +  F+NSWFDP K KEAA  ++ +G DV   M     GV   A E G  +IG 
Sbjct: 185 VNPEVTCNAIFLNSWFDPGKEKEAANTLLSQGCDVICSMTDTATGV-QVAGEGGAWSIGY 243

Query: 237 VIDTQSQYPDTVVASALWNFEPAADHAIKLVKEGKFAAEDYGVYAQMKHKGSELAPLGTF 296
             D         + +   ++      A K V EG + AE     A+     + +  +  +
Sbjct: 244 ASDMAKFGSGKQLTAFTLDWSSEYLRAAKGVAEGTWKAE-----ARWDGLAAGVVKMAPY 298

Query: 297 EKKVPADIIAKVKAKQADILAGKF-----TVKVDDGQPKSTA 333
            + +PADI AK+K  +ADI AGK       +K  DG  K  A
Sbjct: 299 NEAIPADIQAKLKQLEADIAAGKIHPYAGELKDQDGNVKVAA 340