Pairwise Alignments

Query, 334 a.a., Nucleoside ABC transporter, substrate-binding protein from Variovorax sp. SCN45

Subject, 359 a.a., Basic membrane lipoprotein (NCBI) from Rhodospirillum rubrum S1H

 Score =  142 bits (357), Expect = 2e-38
 Identities = 111/323 (34%), Positives = 164/323 (50%), Gaps = 19/323 (5%)

Query: 5   RQLIIRSVAIAAALAAG-APGLALAQQAKLKVAAVYTVPF-EQQWVGRIHKALKAAEAR- 61
           R  IIR + + AALAAG A G A A +   KV  +Y  P  +  W  +  +  +A E   
Sbjct: 2   RTSIIRML-VGAALAAGLATGGAQADEPT-KVGFIYVGPVGDFGWSHQHDQGRQALEKAF 59

Query: 62  -GEIEYKATENVSN-ADYERVMREYATGGNQLILGEVFGVEAAARKVAKDFPKVAFLMGS 119
             +++    E+V   AD ERV+R++A GG  L+    FG      KVA+ FPKV F   +
Sbjct: 60  GDKVKTSFVESVQEGADAERVVRQFAAGGYDLVFTTSFGFMNPTLKVAQQFPKVKFEHAT 119

Query: 120 SLKPQAPNFSVFDNYIQEPAYLSGMVAGGVTKTNRIGMVGGFPIPEVNRLMNAFMAGAKE 179
             K  A N + +     E  Y+ G++AG  TK+  +G V  FPIPEV   +NAF  G   
Sbjct: 120 GYKRSA-NVATYAARFYEGRYVIGVIAGLTTKSKVVGYVASFPIPEVVSGINAFARGLHS 178

Query: 180 TNPKVEFSVSFINSWFDPPKAKEAAFAMIDKGADVM--YAERFGVSDAAKEKGKLAIGNV 237
            NP+ +  V ++NSW+DP K +EAA  +I +GADV+  + +       A+EKG  A G  
Sbjct: 179 VNPEAQVKVIWVNSWYDPGKEREAAETLIAQGADVLSQHTDSPAPVQVAEEKGIFAFGQA 238

Query: 238 IDTQSQYPDTVVASALWNFEPAADHAIKLVKEGKFAAEDY--GVYAQMKHKGSELAPLGT 295
            D     P   + + + N+       +K V +G + AED   G+ A M H    LAP   
Sbjct: 239 SDMSRFGPHAQLTAIVDNWNEYYIDRVKAVMDGTWKAEDTWGGLAAGMVH----LAP--- 291

Query: 296 FEKKVPADIIAKVKAKQADILAG 318
           +   +PAD++ K +A +  I+ G
Sbjct: 292 YNAALPADVVEKAEAVRKAIVDG 314