Pairwise Alignments

Query, 196 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 186 a.a., RNA polymerase sigma factor, sigma-70 family from Pseudomonas stutzeri RCH2

 Score = 57.8 bits (138), Expect = 1e-13
 Identities = 50/183 (27%), Positives = 83/183 (45%), Gaps = 14/183 (7%)

Query: 20  RSLFLRGLDGDARAYRDFLQQLSAHLRAFLGKRLFGWPDEVEDLVQECLLAMHNQRHTYQ 79
           + L  + + GD +A+   ++   A +  F+ +RL G  DE  DL QE  +  +     ++
Sbjct: 6   QELIQQAVRGDRQAFGALVRAHQARVFHFI-RRLLGSTDEAADLTQETFIRAYQALPRWR 64

Query: 80  SDQPLTAWVHAIARYKMIDLLRAKS-----VREDLHDPLDDDLAVFAESAEEASDARRD- 133
            +  L  W+  IAR   +DLLR +        ++  +P+D      A S      + RD 
Sbjct: 65  PEARLQTWLLQIARNAALDLLRQRQRHVVLAADEQAEPIDP-----APSPLRRLQSARDL 119

Query: 134 --LGGLLQTLPERQRLPIVHVKIEGLSVAEAASLTGMSESAVKVGIHRGLKALAARFGNR 191
             L  LL  LP  QR  ++  ++EGLS  E A+   ++   VK  + R  +AL   +   
Sbjct: 120 EMLERLLARLPHEQREILLLREVEGLSYDELAATLQLNAGTVKSRLARAREALLHGYRQA 179

Query: 192 WGG 194
            GG
Sbjct: 180 NGG 182