Pairwise Alignments

Query, 196 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 184 a.a., RNA polymerase sigma factor from Sinorhizobium meliloti 1021

 Score = 48.5 bits (114), Expect = 7e-11
 Identities = 42/151 (27%), Positives = 71/151 (47%), Gaps = 5/151 (3%)

Query: 35  RDFLQQLSAHLRAFLGKRLFGWPDEVEDLVQECLLAMHNQRHTYQSDQPLTAWVHAIARY 94
           R+ L  L + LRAF    L G  D  +DLVQ+ ++    ++  ++    + AW+  I R 
Sbjct: 10  REMLAALPS-LRAF-AMSLIGRHDRADDLVQDTIMKAWAKQDHFEIGTNMKAWLFTILRN 67

Query: 95  KMIDLLRAKSVR-EDLHDPLDDDLAVFAESAEEASDARRDLGGLLQTLPERQRLPIVHVK 153
           ++   +R +    +D    L + LA   E  +  S   +D    L+ LP  QR  I+ V 
Sbjct: 68  ELYSQMRKRGREVQDSDGHLTETLAHHPE--QYGSLDLQDFRRALEQLPPDQREAIILVG 125

Query: 154 IEGLSVAEAASLTGMSESAVKVGIHRGLKAL 184
             G S  EAA++ G +   +K  ++R  + L
Sbjct: 126 ASGFSYEEAATICGCALGTIKSRVNRARQRL 156