Pairwise Alignments

Query, 196 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 212 a.a., Probable alternative RNA polymerase sigma-D factor SigD from Mycobacterium tuberculosis H37Rv

 Score = 46.6 bits (109), Expect = 3e-10
 Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 13/176 (7%)

Query: 19  LRSLFLRGLDGDARAYRDFLQQLSAHLRAFLGKRLFGWPDE----VEDLVQECLLAMHNQ 74
           L ++    + GD  A R+ L+ +   +  +   R+ G  +      +D+ QE  LA    
Sbjct: 29  LDAVVAEAVAGDRNALREVLETIRPIVVRYCRARV-GTVERSGLSADDVAQEVCLATITA 87

Query: 75  RHTYQS-DQPLTAWVHAIARYKMIDLLRAKS-----VREDLHDPLDDDLAVFAESAEEAS 128
              Y+   +P  A+++ IA +K+ D  RA         E L +    D     + A EA 
Sbjct: 88  LPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGP-EQMAIEAD 146

Query: 129 DARRDLGGLLQTLPERQRLPIVHVKIEGLSVAEAASLTGMSESAVKVGIHRGLKAL 184
              R +  LL+ LP +QR  ++   + GLS  E A+  G +  AV+V  HR L+ L
Sbjct: 147 SVTR-MNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRL 201