Pairwise Alignments

Query, 506 a.a., Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) from Variovorax sp. SCN45

Subject, 549 a.a., AMP-binding protein from Methanococcus maripaludis S2

 Score =  230 bits (587), Expect = 9e-65
 Identities = 162/532 (30%), Positives = 248/532 (46%), Gaps = 36/532 (6%)

Query: 7   TVHALIEQQAQRQPHAVYARATETGQHLTYGELARGCRRVAAVLHGAGARPGDTISVVMP 66
           T+    E+QAQ+ P   +    +     TY E       +A  L   G + GD I +   
Sbjct: 7   TIGEFFEKQAQKDPDREFLVYPDRNLRFTYKEFDERTDLLAKGLLEIGIKKGDHIGIWAR 66

Query: 67  NGLQTLRLLLGAMHGGLRVNPVNLLSQPEQMRYVLAHADCRVVCV--------------- 111
           N    L  +      G+ +  VN   +  ++ YV+  +D + + +               
Sbjct: 67  NVPDWLTFMFATAKIGVVLVTVNTAYKSHELAYVMKQSDMKALAIIDSFRDVNYLEILYE 126

Query: 112 -APEWEARVREIVQAFDRPV--TVLVVDPEAE---------VLPGE--TEAPAVAVPPPL 157
             PE +   R  + + + P    V+ V  E           +L G   ++   +     L
Sbjct: 127 LVPELKTSQRGKLNSEEFPYLKNVIYVGQEKHRGMYNTTELMLLGNYVSDEKLIEAKKGL 186

Query: 158 P-DAVALLMYTSGTTGMPKGVMLSQRNLAANAYAISAEHGLRSSDRVLAVLPLYHINAFT 216
             D V  + YTSGTTG PKGVML+ +N+  N Y I  +      +R+   +PL+H     
Sbjct: 187 DSDDVINMQYTSGTTGFPKGVMLTHKNILNNGYYIGEKQKFTEEERLCLPVPLFHCFGIV 246

Query: 217 VTMLAPLAHGGSLAMPPKFSAGRFWEQATQTQCSWINLVPTMISYLLEGPKPPLAQTLAI 276
           + +LA L HGG+L M   F          + +C+ +  VPTM       P   +    ++
Sbjct: 247 LGVLALLTHGGTLVMLEIFDPLLVLAAIQKEKCTAVYGVPTMFIAEFSHPMFEMFDLSSL 306

Query: 277 RFCRSASAALPPEHLR-AFEQKFGIGIVETMGLTETAAPSFSNPM--DPAARKLGSVGRA 333
           R    A +  P E ++      +   I  + GLTE A+P F+     DP  +++ SVG+A
Sbjct: 307 RTGIMAGSTCPIEAMKKVMSDMYMREITISYGLTE-ASPVFTMTSVDDPFEKRVESVGKA 365

Query: 334 SG-CMAGVVDAKLS-AVPDGVTGELVIRGPNVMLGYYKNEEATRASFTPDGWLRTGDLGH 391
              C   ++D +    +  G  GE+  RG NVM GYYK  E T      DGWL +GDL  
Sbjct: 366 MPHCEVKIIDPETGETLAPGNVGEICCRGYNVMKGYYKMPEKTAEVIEKDGWLHSGDLAV 425

Query: 392 RDEDGFFFVTGRIKELIIKGGENIAPREIDEALMRHPAVREAAAVGVPDRHYGQEIGVCI 451
            DEDG++ + GRIK++II+GGENI PREI+E L   P + +A  VG+PD  YG+ +G  +
Sbjct: 426 EDEDGYYKIVGRIKDMIIRGGENIYPREIEEFLYTMPGINDAQVVGIPDEKYGEIVGAFV 485

Query: 452 VLREGCACTEDELRAFGAEALGRYKTPGHYRFVNDLPRGPSGKVQRLKLLPL 503
           + +EG    E+++R F  E + RYK P H   V + P   SGK+Q+ KL  L
Sbjct: 486 IPKEGYEIKEEDVRDFALEKIARYKVPKHVFVVEEFPMTASGKIQKFKLTEL 537



 Score = 24.6 bits (52), Expect = 0.009
 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 1/69 (1%)

Query: 1   MTAPATTVHALIEQQAQRQPHA-VYARATETGQHLTYGELARGCRRVAAVLHGAGARPGD 59
           MT+        +E   +  PH  V     ETG+ L  G +   C R   V+ G    P  
Sbjct: 348 MTSVDDPFEKRVESVGKAMPHCEVKIIDPETGETLAPGNVGEICCRGYNVMKGYYKMPEK 407

Query: 60  TISVVMPNG 68
           T  V+  +G
Sbjct: 408 TAEVIEKDG 416