Pairwise Alignments

Query, 506 a.a., Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) from Variovorax sp. SCN45

Subject, 578 a.a., AMP-binding family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  205 bits (521), Expect = 4e-57
 Identities = 148/492 (30%), Positives = 227/492 (46%), Gaps = 34/492 (6%)

Query: 46  VAAVLHGAGARPGDTISVVMPNGLQTLRLLLGAMHGGLRVNPVNLLSQPEQMRYVLAHAD 105
           +AA L   G  PGD I +  PN ++           G  +  +N   +PE+++Y L +  
Sbjct: 76  LAAGLLKLGIGPGDRIGIWSPNNIEWCLTQFATAKIGAIMVCINPAYRPEELQYALTNVG 135

Query: 106 CR-VVC---------------VAPEWEARVREIVQAFDRPVTVLVVDPEAEVLPGETEAP 149
           CR V+C               +APE +      +QA   P    V+   AE  PG     
Sbjct: 136 CRAVICADKFKSSNYLQMLYTLAPELKECAAGQLQAKALPELQFVIRMGAEKSPGMLNFD 195

Query: 150 AVAVPPPLPDAVAL--------------LMYTSGTTGMPKGVMLSQRNLAANAYAISAEH 195
            + V     D   L              + +TSGTTG PKG  LS  N+  N Y ++   
Sbjct: 196 DLLVEVSADDKAMLERIANGLSPYDAINIQFTSGTTGSPKGATLSHHNILNNGYLVAEAM 255

Query: 196 GLRSSDRVLAVLPLYHINAFTVTMLAPLAHGGSLAMP-PKFSAGRFWEQATQTQCSWINL 254
                D++   +PLYH     +  L  LA G +   P   F      E   + +C+ ++ 
Sbjct: 256 KFTCDDKLCIPVPLYHCFGMVLGNLVCLAKGAAAVFPGDSFDPLTTLEVVERERCTALHG 315

Query: 255 VPTMISYLLEGPKPPLAQTLAIRFCRSASAALPPEHLRAFEQKFGIG-IVETMGLTETAA 313
           VPTM    LE P+       ++R    A A  P E +R  +Q   +  ++   G TE + 
Sbjct: 316 VPTMFIAELEHPEFTRFDLSSLRTGVMAGATCPEEVMRRVQQLMYMQEVLIGYGQTECSP 375

Query: 314 PSFSNPMD-PAARKLGSVGRA-SGCMAGVVDAKLSAVPDGVTGELVIRGPNVMLGYYKNE 371
            +    +D P  +++ +VGRA       +VD     +P    GE+  RG  +M  Y+ + 
Sbjct: 376 LNHITEIDSPVEKRVLTVGRALPHTEVKIVDEFGEVLPINQPGEVCSRGYCIMQCYWNDP 435

Query: 372 EATRASFTPDGWLRTGDLGHRDEDGFFFVTGRIKELIIKGGENIAPREIDEALMRHPAVR 431
           E T A+   +GWL +GD+G  DE G+  + GRIK++II+GGENI PREI+E L  H  V+
Sbjct: 436 EKTAATIDREGWLHSGDIGQMDEQGYVQIVGRIKDMIIRGGENIYPREIEEKLYTHKDVQ 495

Query: 432 EAAAVGVPDRHYGQEIGVCIVLREGCACTEDELRAFGAEALGRYKTPGHYRFVNDLPRGP 491
           +AA  GV    YG+E+   I +R G    E+++R F  E    +K P + +FV+  P   
Sbjct: 496 DAAVFGVHSDKYGEEVCAWIKVRSGATIKEEDIRHFLTEKFAYFKVPRYIKFVDQYPMTV 555

Query: 492 SGKVQRLKLLPL 503
           +GK+Q+ K+  L
Sbjct: 556 TGKIQKFKMREL 567