Pairwise Alignments

Query, 461 a.a., hypothetical protein from Variovorax sp. SCN45

Subject, 541 a.a., RND efflux system, outer membrane protein, NodT family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 58.5 bits (140), Expect = 5e-13
 Identities = 90/364 (24%), Positives = 137/364 (37%), Gaps = 53/364 (14%)

Query: 111 PQVSLTRDFPDV--TGAGITSAFVAGASYAINALITHAATAEAASADARQVRGNLLWQEW 168
           PQ +  RD PD   T AG+  A      + ++         EAA AD R    +      
Sbjct: 145 PQPTTGRDNPDYVQTSAGLDVA------WELDFWGKFRRGIEAADADLRASMADHQTALV 198

Query: 169 QVIAQARLLFVRLDAAHQRHDLLERTRALMADRYRRTAEALAAGLLTADAVTPHLAALQD 228
            V A+    ++      ++  + E   A+  +  R        G  +   +   L+ L+D
Sbjct: 199 SVSAEVARSYILYRTVQKQLAIAETNVAIQRESLRIATARFNYGATSERDMRQALSLLRD 258

Query: 229 VERQLHDLERQTNQADSDLHALLGLSPDTALRLQGRASLPAFDTESVRAHADGRLAARPD 288
            E ++ +L     +  + L  LLG +P       G A +P   T          L  RPD
Sbjct: 259 TEARIPNLAHSLRETRNALCVLLGKAPQDISARLGDAPIPTAPTHVAVGIPADLLRRRPD 318

Query: 289 IAALREGYAAQDARLRVALLGQFPALTLGVQRSRDTSN--------TFTRGF----GITL 336
           +       A Q ARL VA    +PA TLG       SN        TF+ GF    G  L
Sbjct: 319 VHKALATAAGQCARLGVAKADFYPAFTLGGFVGFTASNVGAFGLGDTFSNGFTAYGGPGL 378

Query: 337 GLPILNGNRGEIAVQNATRDKLRAEYQQRLNAGVTDIARITAEQAISLRQLADVEAAIVQ 396
            LP+   N G I      +D   A +QQ L +    +        ++LR+  D     +Q
Sbjct: 379 SLPLF--NYGRIVSNVRAQD---ARFQQSLTSYRETV-------LVALRETEDAIDRFIQ 426

Query: 397 LEG-----------GVRRVRSA---WQAGNAD-------ALALASAETALLAKQGERIDA 435
            +G             R ++ A   +Q G+ D       A  LA+ E AL A +GE   +
Sbjct: 427 AQGRTALLTESASDAARSMQLALIQYQEGSTDFTTVLTAARDLATREDALAAAKGEICQS 486

Query: 436 MQAI 439
           + A+
Sbjct: 487 LVAM 490