Pairwise Alignments

Query, 1057 a.a., VgrG protein from Variovorax sp. SCN45

Subject, 1017 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

 Score =  251 bits (642), Expect = 1e-70
 Identities = 210/728 (28%), Positives = 326/728 (44%), Gaps = 102/728 (14%)

Query: 13  ERLKFRSMTGQERISAL---------FEHRVRLISDMPNIQPRRMLGEDMSIEV----NL 59
           E L  R   GQE +S           F ++V L S + N+   + + +   + +     +
Sbjct: 16  ESLVVRGFEGQESLSDSVWRCEPCYGFRYQVDLASALSNLTAEQFVDQTAHLTILRDGQV 75

Query: 60  ATELGGAGKRFLSGQVTRFAYVGKDDGDM-CVYEATLRPWLWYATRRSDFKIFQFKTAPQ 118
             ++ G  ++   G          D G     Y  TL P L   + RS+ +IFQ ++ P+
Sbjct: 76  VQQINGIVRQLSKG----------DTGHRHTFYSLTLVPALERLSLRSNSRIFQQQSVPE 125

Query: 119 I----LQEV-LAPYGFAIDARLSGNYRTWDYCVQYSESDFNFVSRLMEQEGIYYFFSHAQ 173
           I    LQE+ +  Y FA+    +      ++CVQY E+D  F+ R+  +EG+ Y   H  
Sbjct: 126 IISILLQEMGIEDYAFALKRECAQR----EFCVQYRETDLQFLHRIAAEEGLVYSHLHEA 181

Query: 174 GSHQLVLCDGADSHTPVPSGPVKVPYHAGVLAAQILEQDFIDSWSHSEDIASGNFAADDY 233
             H L+  D +DS    P     VPY+A  LA   +   ++            +    DY
Sbjct: 182 QKHTLLFTDSSDSQ---PKLAKPVPYNA--LAGGEINLPYVVDLQFKTTAQVSHTELKDY 236

Query: 234 DFRKPNAEIDTVRQ-QPAGHSRDDFEIYDWPGGYTELGDGENYARLRLEQLAGRRELVSA 292
            F+KP        Q +   + + ++E +D PG Y +  +G+ ++++RLE L     L  A
Sbjct: 237 SFKKPAYGFTQRTQGKDIAYQQPNYEHFDAPGRYKDDANGKAFSQIRLEYLRRDALLADA 296

Query: 293 EGNLRHMAPGYLFELARHPNAEDNRRYLIEAVTYD-FQENALRVAGAADAAYSESTSSTS 351
           + +   +  G  F+L  H +   NR +L+    +   Q  AL+  G + A        T+
Sbjct: 297 KSDEPLLLAGVRFDLQDHLDHAMNRDWLVVQANHQGTQPQALQEEGGSGA--------TT 348

Query: 352 YRQTFEVLPDSAPFRPARVTPRPRTTGPQTAVVVGPAGEEIHTDEYGRIKVQFHWDRYGR 411
           Y    +++P    +R AR   +P+  GP  A VVGP GEEI+ D +GR+KV F WDRY  
Sbjct: 349 YSNQLKLIPAHITWR-ARPCAKPQVDGPMIATVVGPQGEEIYCDNFGRVKVHFPWDRYSS 407

Query: 412 RDENSSCWIRVSQTWAGSNYGAMHIPRIGQEVIVDFLNGDPDYPIVTGCVYNAAQMPPWE 471
            +E SSCW+RV+Q WAGS YG+M IPR+G EVIV FLNGDPD PI+TG  Y+A    P+ 
Sbjct: 408 SNEKSSCWVRVAQEWAGSQYGSMAIPRVGHEVIVSFLNGDPDQPIITGRTYHATNTAPYA 467

Query: 472 LPRHKTQTGFQTNWSKGGGGKHMLRFEDSRGTEHIELST--------DHGNTHL-----H 518
           LP HKT+T  +T  +  G G + L FED  G+E I L          +H +T +     H
Sbjct: 468 LPDHKTKTVLRTE-THQGQGYNELSFEDQAGSEQILLHAQKDWDALIEHDHTEVIRHDQH 526

Query: 519 MGYLMNQGSGVQRSYGFELRTNEWGSIRADKGLLLTTYTQDYAQRTSRDNPDGHEHMGAT 578
           +    ++ + +QR+    +     G +R+   L                  D    +GA+
Sbjct: 527 LTVDNDRFTRIQRNQHLTVE----GEVRSKIAL------------------DSSHEVGAS 564

Query: 579 LAQ--SNALMQASGQAIAATKALVGAMAQGKNQTLMGLVQGVQA-AGGVSQAVAALAAGG 635
           L       +   +G+ I+        +  G   TL      V+  AGGV     A+    
Sbjct: 565 LQHKVGQRIAVEAGKEISLKSGAKIVVEAGAELTLKAGGSFVKVDAGGVHLVGPAINLNA 624

Query: 636 APEAGVSDNPDPAMADAQQMLDLSRKIDKPVVSIVSPEGQTMISPKPIVLSSGQSVSVRA 695
              AG        +A A +ML  +    KPV  +V P+          + +S QS + R 
Sbjct: 625 GGSAGSGSAYGGQLAAAPRMLAQA----KPVAELVQPD----------IAASMQSGAARV 670

Query: 696 TSAMTLTT 703
               +L T
Sbjct: 671 IDVASLPT 678



 Score = 28.1 bits (61), Expect = 0.003
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 681 KPIVLSSGQSVSVRATSAMTLTTGAQLTQLVTGGMLTQVSEGGQVNVVSGGDIVSHASAG 740
           K I L SG  + V A + +TL  G    ++  GG+      G  +N+ +GG   S ++ G
Sbjct: 579 KEISLKSGAKIVVEAGAELTLKAGGSFVKVDAGGVHL---VGPAINLNAGGSAGSGSAYG 635