Pairwise Alignments

Query, 249 a.a., SSU rRNA pseudouridine(516) synthase (EC 5.4.99.19) from Variovorax sp. SCN45

Subject, 285 a.a., Pseudouridylate synthase from Xanthomonas campestris pv. campestris strain 8004

 Score = 89.7 bits (221), Expect = 6e-23
 Identities = 83/253 (32%), Positives = 117/253 (46%), Gaps = 27/253 (10%)

Query: 3   LQDILYTQGFGTRRVCAGLVQQGHVTIAGQAVTDPFADL---DPDGLLYTVQGTPWAYHE 59
           L  +L   G  +R   A  V  G V++AG+ V DP   L     DG+   + G P A   
Sbjct: 37  LARVLSKLGVCSRTEAARWVADGRVSVAGRVVRDPEFPLRADQHDGI--AIDGQPLAGPA 94

Query: 60  KAYLMLHKPAGTECSQKPST-YPSIYTLLPSPLRLRPNKGAVQGVQAIGRLDQDTTGLLL 118
           + YLML+KP G   + +      ++Y               +  +  +GRLD+ + GLLL
Sbjct: 95  RLYLMLNKPRGVVTTVRDEQGRDTVYRCFDG--------AGLPWLAPVGRLDKASEGLLL 146

Query: 119 LTDDGQFIHKMGSPKHHVPKVYEVTAKHPVDEAQIAKLLAGVVLDDDP---------KPV 169
            ++D Q+   +  P     K Y V      D  Q+A++  GV  D DP         K V
Sbjct: 147 FSNDPQWAAAVTDPATGPDKTYHVQVDCRPDALQLARMHDGVA-DTDPESDGSLLRAKQV 205

Query: 170 RAAACESDSPLHLRLTLTEGKYHQVKRMLAAVGNRVEGLHRSRIGDLALPEDLAPGQWRW 229
           R    E +    L + L EG+  Q++R+LAA+   V  L R  IG LA+ E L  G WR 
Sbjct: 206 RVLR-EGERNAWLEIVLDEGRNRQIRRLLAALEIGVLRLVRVAIGPLAMGE-LGKGSWRL 263

Query: 230 LTAEEVAALRAPA 242
           L+A EV AL APA
Sbjct: 264 LSAAEVRAL-APA 275