Pairwise Alignments

Query, 249 a.a., SSU rRNA pseudouridine(516) synthase (EC 5.4.99.19) from Variovorax sp. SCN45

Subject, 231 a.a., 16S rRNA pseudouridine(516) synthase from Vibrio cholerae E7946 ATCC 55056

 Score =  148 bits (374), Expect = 8e-41
 Identities = 89/225 (39%), Positives = 121/225 (53%), Gaps = 9/225 (4%)

Query: 14  TRRVCAGLVQQGHVTIAGQAVTDPFADLDPDGLLYTVQGTPWAYHEKAYLMLHKPAGTEC 73
           TR+    L++ G VT+    V    A    +      QG     H   Y+M+HKP G  C
Sbjct: 14  TRKEATQLLKSGEVTV-DDVVQKSGAFKLKETSCVEWQGREITLHGPRYIMMHKPDGVVC 72

Query: 74  SQKPSTYPSIYTLLPSPLRLRPNKGAVQGVQAIGRLDQDTTGLLLLTDDGQFIHKMGSPK 133
           S +     +  TLL        ++  +Q +   GRLD DTTGLLL+TDDGQ+ H++ SPK
Sbjct: 73  SHEDGFNQTALTLL--------DEVNIQDLHFAGRLDVDTTGLLLITDDGQWSHRVTSPK 124

Query: 134 HHVPKVYEVTAKHPVDEAQIAKLLAGVVLDDDPKPVRAAACESDSPLHLRLTLTEGKYHQ 193
           H   K Y V    P+      +   G+ L  + +    A  E  S   + LT+ EGKYHQ
Sbjct: 125 HKCEKTYRVWLADPIQADYAEQFNRGIELRGERELTLPAQLEVISETEVLLTIHEGKYHQ 184

Query: 194 VKRMLAAVGNRVEGLHRSRIGDLALPEDLAPGQWRWLTAEEVAAL 238
           VKRM AA+GN+V GLHR RIG + L E L PG++R+LT EEVA++
Sbjct: 185 VKRMFAALGNKVIGLHRERIGQITLDETLEPGEYRYLTEEEVASI 229