Pairwise Alignments

Query, 249 a.a., SSU rRNA pseudouridine(516) synthase (EC 5.4.99.19) from Variovorax sp. SCN45

Subject, 320 a.a., ribosomal large subunit pseudouridine synthase B from Sinorhizobium meliloti 1021

 Score = 93.2 bits (230), Expect = 6e-24
 Identities = 72/234 (30%), Positives = 115/234 (49%), Gaps = 16/234 (6%)

Query: 11  GFGTRRVCAGLVQQGHVTIAGQAVTDPFADLDPDGLLYTVQGTPWAYHEKAYLMLHKPAG 70
           G+ +R     L+ +G V++AG+ +TD    +D +     V GT  A   + YLML+KP G
Sbjct: 93  GYCSRTQAEKLIAEGRVSVAGRKITDLSHWVDIEADRIAVDGTVIAAQARVYLMLNKPRG 152

Query: 71  TECSQK-PSTYPSIYTLLPSPLRLRPNKGAVQGVQAIGRLDQDTTGLLLLTDDGQFIHKM 129
              ++  P   P++++ L +          V  +  +GRLD+ + GLLL T+D     ++
Sbjct: 153 LVTTRDDPEGRPTVFSCLDNV--------DVPSLSPVGRLDKASEGLLLFTNDTVLAQRL 204

Query: 130 GSPKHHVPKVYEVTAKHPVDEAQIAKLLAGVVLDDDPKPVRAAACE----SDSPLHLRLT 185
             P+ H+ KVY V  +    EA  A+++ GV   +  + +RA   E     D    + + 
Sbjct: 205 LDPETHLGKVYHVQVRGIFGEAMAARMVEGVT--EGGELLRALRVERLKGGDRNSWIEIE 262

Query: 186 LTEGKYHQVKRMLAAVGNRVEGLHRSRIGDLALPEDLAPGQWRWLTAEEVAALR 239
           L EG+  Q++RML  +G     L R  IG++ L  DL  G  R LT  E   LR
Sbjct: 263 LDEGRNRQIRRMLDVLGFECLRLLRVSIGEIRL-GDLPKGASRPLTEAEALYLR 315