Pairwise Alignments

Query, 249 a.a., SSU rRNA pseudouridine(516) synthase (EC 5.4.99.19) from Variovorax sp. SCN45

Subject, 230 a.a., pseudouridine synthase, Rsu (RefSeq) from Shewanella amazonensis SB2B

 Score =  156 bits (394), Expect = 4e-43
 Identities = 93/226 (41%), Positives = 125/226 (55%), Gaps = 9/226 (3%)

Query: 14  TRRVCAGLVQQGHVTIAGQAVTDPFADLDPDGLLYTVQGTPWAYHEKAYLMLHKPAGTEC 73
           +R +    +  G V+  G  + DP   + P G     QG   A     YLMLHKP  T C
Sbjct: 14  SRGLAKKAINSGDVSCDGVVMKDPAFKV-PQGARVCFQGEVLALVGVRYLMLHKPVDTIC 72

Query: 74  SQKPSTYPSIYTLLPSPLRLRPNKGAVQGVQAIGRLDQDTTGLLLLTDDGQFIHKMGSPK 133
           S +   YPS+ +LL      RP+K     +   GRLD DTTGL+L+TDDG + HK+ SPK
Sbjct: 73  STQDEYYPSVLSLLDIA---RPDK-----LHIAGRLDADTTGLVLITDDGLWSHKVTSPK 124

Query: 134 HHVPKVYEVTAKHPVDEAQIAKLLAGVVLDDDPKPVRAAACESDSPLHLRLTLTEGKYHQ 193
               K Y V     + +  IA+   GV L+ +    + A  E  S     L++TEGKYHQ
Sbjct: 125 RDCAKRYRVQLAESLTDDLIAQFAEGVQLNGEDGLTKPAKLELLSDTEALLSITEGKYHQ 184

Query: 194 VKRMLAAVGNRVEGLHRSRIGDLALPEDLAPGQWRWLTAEEVAALR 239
           VKRM AAVGN+V GLHR  +G + L   LAPG+WR+LT  E+A+++
Sbjct: 185 VKRMFAAVGNKVIGLHREAVGAIELDPQLAPGEWRYLTEAEIASVK 230