Pairwise Alignments

Query, 1361 a.a., T6SS component TssM (IcmF/VasK) from Variovorax sp. SCN45

Subject, 1181 a.a., type VI secretion system membrane subunit TssM from Vibrio cholerae E7946 ATCC 55056

 Score = 71.2 bits (173), Expect = 5e-16
 Identities = 83/357 (23%), Positives = 142/357 (39%), Gaps = 26/357 (7%)

Query: 8   LISIAVLTLVVLLVLGMVLYFAARRSHAKPSSDPKVARIRFDSLRS-SFRQAVEL----- 61
           +++ ++ TL  L V G+  +   R+  A  S   +  ++R D ++    RQ VEL     
Sbjct: 57  VVASSLFTLGCLAVWGIWQW---RKLQAFKSEQKREEQLRQDPIKVYEQRQEVELNQVML 113

Query: 62  -IEGNIASRADRYGIPWIMLLNEGDDHRQLPIEQSG----VASALSTESASAAATQGISW 116
            ++ ++      Y +PW ++L   +  +   I +SG     +S +      +       W
Sbjct: 114 NMKQSLNKHNYLYALPWYLVLGLENAGKTSLINRSGQNFVFSSVMRASGQKSENPYSFDW 173

Query: 117 HFFDRGVVIDIQGAYLG----SPDDDDASEKP-WDEFLGMCRAYRPQRPFDSVVITIPAA 171
              D  V+ID  G  L     S ++D A E+  W  F+      R +RP + +V+ +  A
Sbjct: 174 WIGDESVLIDPDGELLTQGNRSEENDGALERRLWLHFVDWLDRTRSRRPLNGIVLALDVA 233

Query: 172 LLLDESTDGRLELSKRAKLAHRRLWLAQNRFAMRFAVYVLITGAEQLEGFSAFARALPEP 231
            L   +T    E    A L   RL       + R  VY+ +T  + L GF  F +   + 
Sbjct: 234 HL---ATATASERKAYANLLRARLRELMETLSTRLPVYIALTKLDLLHGFEPFFKHYTKS 290

Query: 232 LRASMLGWSSPYDLSTTYQPGWVDEAVGTVVRSVSDVSAELFATDTSPQGAGPQLLLPS- 290
            R  +LG++   D S      W++E      + VS V+  L     +P     +  + S 
Sbjct: 291 QREEVLGFTFSMD-SVDNLDSWLEEFASEYTQFVSRVNGMLPHAVAAPMTLEERNAIYSF 349

Query: 291 --RIEALRGQLQLYVDELMRPSAYHEPFFFRGIYLTGDAGESAQAVAAIDAEHDAYG 345
             +I  L+  LQ +  E +    +      RG Y T    +     A  DA    YG
Sbjct: 350 TRQISGLKEILQQFFQEALASDQFSTSALVRGAYFTSVYQQGVPTNAFDDAASRRYG 406