Pairwise Alignments

Query, 415 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

Subject, 334 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score =  122 bits (307), Expect = 1e-32
 Identities = 87/302 (28%), Positives = 146/302 (48%), Gaps = 9/302 (2%)

Query: 80  RTPTAGQTLSLPGTLQGFVQSPISARASGYLKRWTKDIGSRVEKGELLAEIETPEIDQQL 139
           +T    Q + L G +Q   Q  ++A+ SG +     D+   V+K ++L EI   +    L
Sbjct: 30  KTELISQIVELDGVVQPVNQGSLAAQTSGRVVGLYVDVNDFVKKDQVLLEISAVQQSAAL 89

Query: 140 SQAVAARAQAASGLELARSTADRWEALRKKDVVSQQELDERRSAVAQATSNVAAADANVQ 199
             A A  A A +    A++  +R+  L  K  +S+ ++D   +    A + V +A A V+
Sbjct: 90  DAAQAQLASATAQNREAQAQLNRYRQLFPKGAISKDQMDSAEARARSADAAVKSAQAAVE 149

Query: 200 RLKQTEGFKRVVAPFAGVITRRNVDVGDLIDAGSGGGAGRALFLLAQTDPLRVYINVPQA 259
           + K++ G+  + AP+ G++T+R V++G+ +  G+    G +L      D LRV   +PQ 
Sbjct: 150 QAKESLGYTNITAPYDGIVTQRMVELGETVAPGTPLLRGFSL------DELRVETEIPQR 203

Query: 260 YAQLVKAGQPVVVTQAELRGQTFKGQVARTAGSIDTTTRMMQVEVSLPNSDGALLPGAYV 319
           Y   V       V  A+  G+  K          D  +   +  + LP +  AL+PG +V
Sbjct: 204 YQPYVADVSQFTVRTAQ--GEQLKPVEFSLFSYADPQSHTFKTRLELPQNSAALVPGMWV 261

Query: 320 QVSLPLAASRTLSVPSNALLFRAEGTRIAVVDPQGRVNLRAVTLGRNYGENVEVIDGLEH 379
           +          L VPS+A+L RAE + +  V+  G+  L  V LG+ YG+ VEV+ GLE 
Sbjct: 262 KTEFNYGQREVLVVPSSAVLRRAELSAVYRVN-NGQRALNPVRLGQVYGDYVEVLSGLEL 320

Query: 380 TD 381
            D
Sbjct: 321 GD 322