Pairwise Alignments

Query, 415 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

Subject, 386 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella loihica PV-4

 Score =  122 bits (305), Expect = 2e-32
 Identities = 107/390 (27%), Positives = 176/390 (45%), Gaps = 32/390 (8%)

Query: 27  RQIVRRTRWLVLIVLVLLGLGAARTVFVRIANARALEAGTTERAKQYVQTALPRTPTAGQ 86
           RQIV+    LV + L + G G         A  R++E G  +  +Q         P A Q
Sbjct: 2   RQIVKIAS-LVSVALWITGCGQDENQGHSAAAPRSMEVGVVQVVEQ---------PQAIQ 51

Query: 87  TLSLPGTLQGFVQSPISARASGYLKRWTKDIGSRVEKGELLAEIETPEIDQQLSQAVAAR 146
            + LPG  + ++++ +  + SG +       G  V +G+ L +I++      L  A A  
Sbjct: 52  -VELPGRSKAYLEAEVRPQVSGIITERGFVEGGEVTEGQSLYQIDSSTYKAALVSAEADL 110

Query: 147 AQAASGLELARSTADRWEALRKKDVVSQQELDERRSAVAQATSNVAAADANVQRLKQTEG 206
           A+A + L  A++ A R++AL K D +SQQ+ DE  +   +A +NV  A A +   K    
Sbjct: 111 ARANASLVSAKAKAARYKALIKTDAISQQDFDEADALYKEALANVTVAKAAINTAKINLE 170

Query: 207 FKRVVAPFAGVITRRNVDVGDLIDAGSGGGAGRALFLLAQTDPLRVYINVPQAYAQL--- 263
           + +V AP +G I + +V  G L+ A        AL  + Q DP+ V  ++ Q+ AQL   
Sbjct: 171 YTQVKAPISGRIGKSSVTAGALVTANQSA----ALATIQQLDPINV--DIAQSSAQLLRL 224

Query: 264 ---VKAGQPVVVTQAELR-----GQTFK--GQVARTAGSIDTTTRMMQVEVSLPNSDGAL 313
              +K GQ      A++R     G  ++  G +     S+D  T  + +    PN DG L
Sbjct: 225 KAKLKQGQLQAADNADVRLILEDGTAYEHMGSLRFAEVSVDENTGSVTLRAEFPNPDGVL 284

Query: 314 LPGAYVQVSLPLAAS-RTLSVPSNALLFRAEGTRIA-VVDPQGRVNLRAVTLGRNYGENV 371
           LPG YV+  L      + + VP  A+    +G  +A V+  + +V  R VT         
Sbjct: 285 LPGMYVRAVLNAGTDPKAILVPQKAVTRNTKGQAVAMVIGAESKVEPRVVTTAEVIDHQW 344

Query: 372 EVIDGLEHTDRMVLNPSDSLAEGDVVAVAP 401
            +  GL+  D++++     +  G  V   P
Sbjct: 345 RITSGLKAGDQLIVEGLQKIRPGAPVVGKP 374