Pairwise Alignments

Query, 555 a.a., Lipid A export permease/ATP-binding protein MsbA from Variovorax sp. SCN45

Subject, 589 a.a., ABC transporter, transmembrane region:ABC transporter from Pseudomonas syringae pv. syringae B728a

 Score =  259 bits (663), Expect = 2e-73
 Identities = 181/540 (33%), Positives = 285/540 (52%), Gaps = 16/540 (2%)

Query: 14  LKPLLDRGF-TRGEMPLWFVPAAVLLLFAVRGIAQFISQYALSRIANEGMQKLRRVMFER 72
           +K ++D+GF TR    L       +LL     +  F   Y +S I    +  LR+ +F+ 
Sbjct: 48  IKLMVDQGFMTRSPQLLERSIGFFMLLTVGLAVGTFARFYLVSWIGERVVADLRKKVFDH 107

Query: 73  LLGAELALFTRQSASALSNTVVYEVQTGAMLLVQALLGLSRDGFTLIALL--GYLVYL-- 128
           L+      +    +S + + +     T    L+Q+++G S   F   AL+  G +V L  
Sbjct: 108 LIELHPGFYENNRSSEIQSRL-----TADTTLLQSVIGSSLSMFLRNALMVIGGIVLLFI 162

Query: 129 -NWKLTLIVAFLVPSISWIMKVFSKRLYRLTQQGQQATDELAYVVEENVLAHRVVRLHGA 187
            N KLT IV   +P I   + +F +R+  L+++ Q     +   V E +   + V+ +  
Sbjct: 163 TNPKLTSIVVVALPLIIAPILMFGRRVRNLSRESQDRVANVGSYVAEALGQIKTVQAYNH 222

Query: 188 EGAQGRRFEQLSQRLNRLAVKSTIAQAATTPLTQMMASLALSVVVMIALWQSGKQGFTVG 247
           +    +RF    ++    A K  + ++    L  ++   A++V++ +          + G
Sbjct: 223 QQQDKQRFSHTVEQAFETARKRILQRSWLITLVIVLVLGAVAVMLWVGGMDVISGRISSG 282

Query: 248 GFVAYITAMLMLIAPIRRLAEVAGPITRGLAALERGLVLIDEVAPESQGTFRIE----HA 303
              A++   LM+      L+EV G + R   A ER   L+   +  S  T  ++      
Sbjct: 283 ELAAFVFYALMVGMAFGTLSEVIGDLQRAAGAAERIGELLQARSEISVPTTDLQSLPPRI 342

Query: 304 EGRIELRNVQVSYRGDDEQRALDGVNLTIEPGQVVAFVGPSGSGKTTLVNLLPRFVQPSS 363
            GR+ L NV  +Y    E+ ALD + L+IEPG+ +A VGPSG+GK+T+++LL RF  P  
Sbjct: 343 SGRLALENVTFAYPSRPERNALDNLTLSIEPGETLALVGPSGAGKSTILDLLLRFYDPIQ 402

Query: 364 GQVLLDGHDTSEWELKSLRAQFAMVSQDVVMLNETLAANVALGSEI-DRERVLQCIDAAN 422
           G++L++G   ++ +   LR  FA+VSQ   +   T+  N+  G+     E+V      A+
Sbjct: 403 GRILIEGVPIAQLDHHDLRRCFALVSQSPALFFGTVEDNIRYGNATASLEQVQAAARIAH 462

Query: 423 LSSHVENLPQGIDTVLGHNATQLSGGQRQRLAIARALYKNAPVLLLDEATSALDTESERL 482
               + ++  G  T LG     LSGGQRQRLAIARAL  +AP+LLLDEATSALD +SE L
Sbjct: 463 AHEFILDMADGYRTHLGEGGVGLSGGQRQRLAIARALLVDAPILLLDEATSALDAQSEHL 522

Query: 483 VQDALQRLMQNRTTLIVAHRLSTIQHADRIIVMEQGRIAEQGSHEQLMQLDGLYARLQTL 542
           +Q AL  LMQ RTTL++AHRL+T+Q+ADRI VM+QGR+   G+H+QL+  + LYARL  L
Sbjct: 523 IQQALPSLMQGRTTLVIAHRLATVQNADRIAVMDQGRLVAVGTHQQLIASNPLYARLAAL 582