Pairwise Alignments

Query, 555 a.a., Lipid A export permease/ATP-binding protein MsbA from Variovorax sp. SCN45

Subject, 618 a.a., lipid ABC transporter ATPase/inner membrane protein (RefSeq) from Shewanella sp. ANA-3

 Score =  244 bits (624), Expect = 5e-69
 Identities = 176/538 (32%), Positives = 270/538 (50%), Gaps = 20/538 (3%)

Query: 17  LLDRGFTRGEMP-LWFVPAAVLLLFAVRGIAQFISQYALSRIANEGMQKLRRVMFERLLG 75
           ++D GF +     L  +   VLL+ AV G A F   Y ++ +       +R  ++ +LL 
Sbjct: 77  MVDEGFIKDNAQRLNEIILLVLLITAVSGTAVFCRFYLMTWLGERVSADIRLTVYNQLLK 136

Query: 76  AELALFTRQSASALSNTVVYEVQTGAMLLVQALLGLS-----RDGFTLIALLGYLVYLNW 130
              A + +     + +       T    L+Q ++G S     R G T+I  L  +   + 
Sbjct: 137 LSPAFYAKVRTGEVISRF-----TADSTLLQTVVGSSLSMALRSGVTVIGGLAMMGITSV 191

Query: 131 KLTLIVAFLVPSISWIMKVFSKRLYRLTQQGQQATDELAYVVEENVLAHRVVRLHGAEGA 190
           K+TL+V   VP +   +  F +++  L ++ Q    +L   V+E +     V+ +G E  
Sbjct: 192 KMTLLVLLAVPLVLGPVGFFGRKVRTLARESQDRVADLGAYVDETLHEIHTVQAYGHEDK 251

Query: 191 QGRRFEQLSQRLNRLAVKSTIAQAATTPLTQMMASLA-LSVVVMIALWQSGKQGFTVGGF 249
               F    + +  +A    I   A    + M  S+A ++ V  +          T G  
Sbjct: 252 DRSLFNGRVEDV-MIAASGRIRYRAMLISSVMFLSIAAIASVTWVGAHDVMSGKMTGGEL 310

Query: 250 VAYITAMLMLIAPIRRLAEVAGPITRGLAALERGLVL----IDEVAPESQGTFRIEHAEG 305
            A++   +M+   +  ++EV G I R   A ER + L    +D  AP    T   +   G
Sbjct: 311 SAFMFYAVMVAGAVATISEVVGEIQRASGAAERLIELAETEVDIPAPLEPKTLPAK-VRG 369

Query: 306 RIELRNVQVSYRGDDEQRALDGVNLTIEPGQVVAFVGPSGSGKTTLVNLLPRFVQPSSGQ 365
            ++L+ +   Y  +  Q  L  + LTI  G+ VA VGPSG+GK+TL  LL RF  PSSG 
Sbjct: 370 ELQLQQLNFHYP-EQTQLVLRDLELTITAGERVALVGPSGAGKSTLFQLLQRFYVPSSGS 428

Query: 366 VLLDGHDTSEWELKSLRAQFAMVSQDVVMLNETLAANVALGS-EIDRERVLQCIDAANLS 424
           + LDG D +E   K LRAQFA+V QD V+   ++  NV  G  +   + V+    AA   
Sbjct: 429 IHLDGIDIAELSPKDLRAQFALVPQDSVIFATSVLENVRYGRVDASEQEVIDACIAARAH 488

Query: 425 SHVENLPQGIDTVLGHNATQLSGGQRQRLAIARALYKNAPVLLLDEATSALDTESERLVQ 484
             +    +G  T LG    +LSGGQ+QR+AIAR +  + P+LLLDEATSALD  SE+ V+
Sbjct: 489 EFISEFSEGYQTYLGERGVRLSGGQKQRIAIARVILADRPILLLDEATSALDALSEQKVK 548

Query: 485 DALQRLMQNRTTLIVAHRLSTIQHADRIIVMEQGRIAEQGSHEQLMQLDGLYARLQTL 542
            AL  LM+ +TTLI+AHRL+T+ +ADRIIV ++GRI   G H+ L+Q + LY    +L
Sbjct: 549 LALDELMKGKTTLIIAHRLATVINADRIIVFDKGRIVASGKHQTLIQTNALYREFASL 606