Pairwise Alignments

Query, 330 a.a., TRAP-type C4-dicarboxylate transport system, periplasmic component from Variovorax sp. SCN45

Subject, 332 a.a., C4-dicarboxylate ABC transporter from Vibrio cholerae E7946 ATCC 55056

 Score =  127 bits (319), Expect = 4e-34
 Identities = 87/308 (28%), Positives = 144/308 (46%), Gaps = 6/308 (1%)

Query: 12  LIAIGLIALTASNVTT-----ARTFRSAEVHAKD-FPTNQAVKFMGDELSKATGGKDNIK 65
           LIA  ++A+T+ N            + + V   D  P   A   +   +++   GK  ++
Sbjct: 7   LIAASILAVTSFNAAANCDPGEIVIKFSHVTNTDKHPKGIAASLLEKRVNEEMNGKACMQ 66

Query: 66  IFADSSLGSEKDTVEQVKIGALDMVRVSSASFHGIVPESVIPSLPFLFRDIEHFRKAMYG 125
           +F +S+L  +   +E +  G + +   S + F     +  I  LPFLF D++   +    
Sbjct: 67  VFPNSTLYDDDKVLEALLNGDVQLAAPSLSKFEKFTKKYRIFDLPFLFEDVDAVDRFQSS 126

Query: 126 PTGDKVLAAFEKAGFIGLCMYESGARSVYAKKPIKSVADMKGLKIRVQPSDLMVSLVSAA 185
             G+++  A  + G  GL  + +G + + A KPI   AD KGLK RVQ SD++V+     
Sbjct: 127 AKGEELKNAMTRRGVKGLEFWHNGMKQISANKPILVPADAKGLKFRVQASDVLVAQFEQI 186

Query: 186 GASPTPMPIAEVYTGLKTGLVDAAENNYPSYEEAKHFEAAPVYSETMHVMTPEVLVFSKK 245
           GA+P  M  AE Y GL+T ++D  EN + +    K+FE     +ET H +   ++V S K
Sbjct: 187 GANPQKMSFAETYGGLQTKVIDGQENTWSNIYGQKYFEVQDGTTETNHGILDYLVVTSSK 246

Query: 246 IWDTLTKEEQAAIRKAAKDSVPYYVKLWEPREKDAKAAVIKGGAKIVAASEIDRKGFVDV 305
            WD L  + +    K   +            E+  K  +I+ G  +   +   R+ +VD 
Sbjct: 247 WWDGLPADVRDQFAKILNEVTIERNAESNKVEELNKQYIIEAGGVVRTLTPEQRQQWVDA 306

Query: 306 EKPVWDKF 313
            KPVW KF
Sbjct: 307 LKPVWQKF 314