Pairwise Alignments

Query, 330 a.a., TRAP-type C4-dicarboxylate transport system, periplasmic component from Variovorax sp. SCN45

Subject, 321 a.a., sialic acid-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  117 bits (292), Expect = 5e-31
 Identities = 71/303 (23%), Positives = 145/303 (47%), Gaps = 5/303 (1%)

Query: 13  IAIGLIALTAS-NVTTARTFRSAEVHAKDFPTNQAVKFMGDELSKATGGKDNIKIFADSS 71
           I I ++ L+A+ +V  A T +     +       + K + D L + + G+  + ++  + 
Sbjct: 7   ITIAILTLSAAASVNAATTLKMGMQASVGSVEYNSAKMLADTLEEMSQGEIKLALYPSAQ 66

Query: 72  LGSEKDTVEQVKIGALDMVRVSSASFHGIVPESVIPSLPFLFRDIEHFRKAMYGPTGDKV 131
           LG ++  ++Q+ +G LD+           +P +    LP++ +D +H R+      G  V
Sbjct: 67  LGDDRAMLQQLTLGDLDITYAEFGRMGLWIPRAEAVMLPYVAKDFDHLRRMFESDFGQGV 126

Query: 132 L-AAFEKAGFIGLCMYESGARSVYAKKPIKSVADMKGLKIRVQPSDLMVSLVSAAGASPT 190
                +K  +  L  + +G R   + +P+ S+ D KGLK+RV  +   ++    +GASPT
Sbjct: 127 RDEMLQKFNWRALDTWYNGTRETTSNRPLNSIEDFKGLKLRVPNAKQNLNYAKLSGASPT 186

Query: 191 PMPIAEVYTGLKTGLVDAAENNYPSYEEAKHFEAAPVYSETMHVMTPEVLVFSKKIWDTL 250
           PM  +EVY  L+T  VD  EN  P+ +  K +E     + T H++  ++++ S+  W  L
Sbjct: 187 PMSFSEVYLALQTNAVDGQENPLPTIKTMKFYEVQKNLAMTHHIVNDQMVIISESTWQKL 246

Query: 251 TKEEQAAIRKAAKDSVPYYVKLWEPREKDAKAAVIKGGAKIVAASEIDRKGFVDVEKPVW 310
           +  ++  I+KA +     + +  + +E +  +     G  +      D + F +  +P++
Sbjct: 247 SDTDKDIIQKAVQKVGDAHTQTVKTQEAELVSFFKSEGINVTYP---DLEPFREAMQPLY 303

Query: 311 DKF 313
            +F
Sbjct: 304 KEF 306