Pairwise Alignments

Query, 330 a.a., TRAP-type C4-dicarboxylate transport system, periplasmic component from Variovorax sp. SCN45

Subject, 359 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score = 71.6 bits (174), Expect = 3e-17
 Identities = 66/226 (29%), Positives = 103/226 (45%), Gaps = 18/226 (7%)

Query: 46  AVKFMGDELSKATGGKDNIKIFADSSLGSEKDTVEQVKIGALDMVRVSSASFHGIVPESV 105
           A K M    ++ + G+  I+I + +   +     + VK G  D+   SS  + G VP ++
Sbjct: 51  APKNMAKLAAEMSNGRIQIRIDSANKHKAPLGVFDMVKSGQYDLGHSSSYYWKGKVPNTL 110

Query: 106 I-PSLPFLFRDIEHFRKAMYG---PTGDKVLAAFEKAGFIGLCMYESGARSV----YAKK 157
              S+PF     E +    YG   P  +KV A      F G      G   +    + KK
Sbjct: 111 FFSSMPFGMIATEQYAWFYYGGGMPLMEKVYAPHNLLSFPG------GNSDIQMGGWFKK 164

Query: 158 PIKSVADMKGLKIRVQPSDLMVSLVSAAGASPTPMPIAEVYTGLKTGLVDAAENNYPSYE 217
            I SV D++GLK+R+        +++  GA PT +   E+YT L+ G +DA E   P+++
Sbjct: 165 EINSVDDLQGLKMRIP--GFAGEVLAKLGAKPTNIAPGELYTSLERGTIDALEWVGPAFD 222

Query: 218 EAKHF-EAAPVYSETMHVMTPEV-LVFSKKIWDTLTKEEQAAIRKA 261
               F + AP Y    H    E   + +KK WDTL K+ Q  +  A
Sbjct: 223 LRMGFHKIAPYYYTAWHEPGSETQFLVNKKKWDTLPKDIQVILETA 268