Pairwise Alignments

Query, 330 a.a., TRAP-type C4-dicarboxylate transport system, periplasmic component from Variovorax sp. SCN45

Subject, 338 a.a., ABC transporter substrate-binding protein from Sinorhizobium meliloti 1021

 Score =  150 bits (379), Expect = 4e-41
 Identities = 96/329 (29%), Positives = 166/329 (50%), Gaps = 7/329 (2%)

Query: 5   QMKKLSGLIAIGLIALTASNVTTA---RTFRSAEVHAKDFPTNQAVKFMGDELSKATGGK 61
           ++ KL+  +A+ L  +TA         +T + A  + K  P    ++   + + + +GGK
Sbjct: 4   RLTKLTLGLAVPLALMTAGPALAEIRDQTVKFASANNKGHPQVTGMEKFAELVKEKSGGK 63

Query: 62  DNIKIFADSSLGSEKDTVEQVKIGALDMVRVSSASFHGIVPESVIPSLPFLFRDIEHFRK 121
             +K+F   +LG +  TV  ++ G ++M  +++      V E     LPFLF   E   K
Sbjct: 64  IEVKLFPGGTLGGDVQTVSALQGGVIEMTVLNAGILASNVKEFGAVDLPFLFDSGEEADK 123

Query: 122 AMYGPTGDKVLAAFEKAGFIGLCMYESGARSVYAKK-PIKSVADMKGLKIRVQPSDLMVS 180
            M GP G  ++      G +G+  +E G R++   + P+  + D+KGLKIR   S + V 
Sbjct: 124 VMDGPFGTSLMERLPATGLVGVAYWELGFRNLTNNRHPVTKLEDIKGLKIRTIQSPIPVE 183

Query: 181 LVSAAGASPTPMPIAEVYTGLKTGLVDAAENNYPSYEEAKHFEAAPVYSETMHVMTPEVL 240
           L +A GA+  P+P  E+YT L+TG VD  EN   +   AK +E     + T H   P+++
Sbjct: 184 LFNALGANAVPLPYTELYTALETGTVDGQENPSANIINAKFYEVQKYMTLTRHQYNPQIV 243

Query: 241 VFSKKIWDTLTKEEQAAIRKAAKDSVPYYVKLWEPREKDAKAAVIKGGAKIVAASEIDRK 300
           + SKK WD L  EE+  +++AA ++  +  K+   ++  A   + K G ++   S  + +
Sbjct: 244 LVSKKFWDGLNDEEKTVLQQAAVEARDFQRKVSREQDAAALEEIRKTGMEVSELSAEETQ 303

Query: 301 GFVDVEKPVWDKFATTPEQ---KALVQEI 326
              D  KP+ +KF+    Q   +AL +EI
Sbjct: 304 KLRDAVKPMIEKFSADIGQETVEALFKEI 332