Pairwise Alignments

Query, 249 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 225 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  121 bits (303), Expect = 1e-32
 Identities = 60/206 (29%), Positives = 118/206 (57%), Gaps = 5/206 (2%)

Query: 5   LDFAPLASYWPVFINGAWLTLKMTALAVVIGVAVGTLVAFAKRSKIRLLSRACTIYIEIV 64
           +DF+ +    P++++G W T+ + +L++VIG+     +A A+ SK +  S     YI  +
Sbjct: 1   MDFSLIIDSLPIYLSGLWTTVWLVSLSLVIGLLCAIPLAIARNSKQKWFSLPAWGYIYFL 60

Query: 65  RNTPFLVQIFLLYFGLASFGVRMPT-----FAAAVLAMVINIAAYAAEIIRAGLESVPRG 119
           R TP LVQ++L+Y+G+  +     T     +  A++A ++N +AY AEIIR  +  +P+G
Sbjct: 61  RGTPLLVQLYLIYYGMDQWFPVKDTLWEHAWFCALVAFILNTSAYTAEIIRGAINGLPKG 120

Query: 120 QIEAAECLGLSKWRIGWHVMLQPSIEKVYPALTSQFLLMMQASAMASQISAEELTAIANT 179
           ++EAA+  G+S+++    ++L  ++ +  PA +++ + M+  SA+A  ++  +LT  A  
Sbjct: 121 EVEAAKAYGMSRFQTYQRIILPSALRRSLPAYSNEVIFMLHGSAVAGIVTIMDLTGAARL 180

Query: 180 VQSDTFRSLETYIVVAALYLVLSLFI 205
           V S  +   E ++     Y+ L+  I
Sbjct: 181 VNSRYYAPFEAFLSAGLFYMALTFII 206