Pairwise Alignments

Query, 290 a.a., ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

Subject, 336 a.a., branched-chain amino acid ABC transporter permease from Rhodopseudomonas palustris CGA009

 Score =  157 bits (396), Expect = 4e-43
 Identities = 104/297 (35%), Positives = 159/297 (53%), Gaps = 18/297 (6%)

Query: 2   LTILFDGIAYGMLLFVLAVGLAVTLGLMNFINLAHGAFAMAGGYLTVFAMQKLG------ 55
           +T+    +A GM++F++A GL +  GLM+ +N  HGAF   G Y+    +  L       
Sbjct: 41  VTLTVASLAMGMMIFIMASGLTLVFGLMDVLNFGHGAFIAVGAYVATLVLLPLAAMSGAD 100

Query: 56  --LPFLACL-PLAFIVVALAGAL---LERTLYRPMYGKPHLDQVLFSIGLAFMAVAAIDY 109
             L  LA L P     +A++GAL   +ER L  P+YG+ HL Q+L + G   +A  A+  
Sbjct: 101 SLLTNLAVLVPAVLAAMAVSGALGVVVERVLILPVYGQ-HLKQILMTTGGLIVAEQALYA 159

Query: 110 FVGSSQQNVQLPEWLRGRTEIGDGAFMLGMGHYRLFIIGVCAVLTVVLQLILSKTRFGSR 169
             G     + LP  LRG   IGD    + +  YRL ++ V  V+ V +QL L++T+ G  
Sbjct: 160 LWGPQIIPLPLPTSLRGSFIIGD----IAIAKYRLLVMLVGLVVFVGIQLTLNRTKIGLL 215

Query: 170 LRAAVDDPRVAAGLGINVNIVFLLTFAVGSGLAGLGGALGAEIL-GLDPTFPLKYMIYFL 228
           +RA V++  +   LG +V  +FL  F VGS LAGLGG + A     +  +   +  +   
Sbjct: 216 IRAGVENREMVEALGYHVKRLFLGVFMVGSALAGLGGVMWALYREQVHASMGNELTVLIF 275

Query: 229 IVVSVGGTSSITGPLAAALLLGIADVAGKYFIPKMGAFTVYLLMILILMWRPQGLFT 285
           IVV +GG  S+ G    ALL+ +    G + +PK+   +  LLM+ ILMWRP+GL++
Sbjct: 276 IVVIIGGLGSVGGCFIGALLVAMVANYGGFLVPKLALVSNILLMVAILMWRPRGLYS 332