Pairwise Alignments

Query, 290 a.a., ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

Subject, 288 a.a., ABC transporter permease from Herbaspirillum seropedicae SmR1

 Score =  351 bits (901), Expect = e-102
 Identities = 173/287 (60%), Positives = 227/287 (79%), Gaps = 4/287 (1%)

Query: 2   LTILFDGIAYGMLLFVLAVGLAVTLGLMNFINLAHGAFAMAGGYLTVFAMQKLGLPFLAC 61
           L +LFDGIAYG LLF+++VGL+VT+G+MNFINLAHGAFAM GGY+ V  +  +G+PFLA 
Sbjct: 6   LGVLFDGIAYGSLLFLISVGLSVTMGMMNFINLAHGAFAMLGGYVCVTLLNGMGVPFLAT 65

Query: 62  LPLAFIVVALAGALLERTLYRPMYGKPHLDQVLFSIGLAFMAVAAIDYFVGSSQQNVQLP 121
           LPLAFI  A+ G +LER+LYR +Y   HLDQVLFSIGL FMAVA   +  G +QQ V LP
Sbjct: 66  LPLAFIAAAIVGLVLERSLYRRLYKASHLDQVLFSIGLTFMAVAGATWQWGPTQQPVVLP 125

Query: 122 EWLRGRTEIGDGAFMLGMGHYRLFIIGVCAVLTVVLQLILSKTRFGSRLRAAVDDPRVAA 181
           +WLRG+  +      L +G YR+F+IGV  ++TV L L++ +TRFG+++RA+VD+   AA
Sbjct: 126 DWLRGQISL----LGLEVGAYRVFLIGVVVIVTVALGLLIERTRFGAQIRASVDNQVAAA 181

Query: 182 GLGINVNIVFLLTFAVGSGLAGLGGALGAEILGLDPTFPLKYMIYFLIVVSVGGTSSITG 241
           GLGINV+ VF LTFA+GSGLAGLGG LG ++LGLDPTFP+KYM+YFL+VV+VGG  +I G
Sbjct: 182 GLGINVSRVFSLTFALGSGLAGLGGGLGIDVLGLDPTFPVKYMVYFLLVVAVGGAGTIKG 241

Query: 242 PLAAALLLGIADVAGKYFIPKMGAFTVYLLMILILMWRPQGLFTRKG 288
           PL AAL+LG+ DVAGKY++P++GAF +Y LM+++L+  P GL  R+G
Sbjct: 242 PLLAALILGVFDVAGKYYVPEIGAFVIYGLMVVLLILFPAGLMRRRG 288