Pairwise Alignments

Query, 375 a.a., Putative transmembrane protein from Variovorax sp. SCN45

Subject, 620 a.a., cyclic nucleotide-binding protein (RefSeq) from Shewanella sp. ANA-3

 Score = 48.9 bits (115), Expect = 4e-10
 Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 24/144 (16%)

Query: 227 TLHCADIMSREPISVEFGTPLQEAWALMHERRIKALPITDRTRRVVGIVTQADFFRQLDL 286
           T   + +MS  PI ++    + +A  LM   R+ +L +TD   ++VGI+T  D   ++  
Sbjct: 149 TSRISTLMSSSPIMIDAHASVTQAALLMRNSRVSSLLVTDN-HKLVGILTDKDLRNRVLA 207

Query: 287 QHHEGIAGKLRDLIRATRTVMSNKPEVVGQIMTRQVRVASADRPVVDLVPLFSEGGHHHI 346
               G+ G++                 V Q MT      S++  + + + L SE   HH+
Sbjct: 208 A---GLDGRI----------------AVHQAMTTSPISISSNALIFEAMLLMSEHNIHHL 248

Query: 347 PIID----GEKRLAGMITQSDFVR 366
           PIID     E +  GM+T +D +R
Sbjct: 249 PIIDEQNTEEVKAIGMVTSTDILR 272



 Score = 35.0 bits (79), Expect = 6e-06
 Identities = 43/190 (22%), Positives = 70/190 (36%), Gaps = 13/190 (6%)

Query: 103 TIAAAVAVALAIALMFSARCLHPPGGAAALLAVLTHTTHFSSALFPFFTNSLLLVLAGVL 162
           T+ +   V   +A++  +   H P   A    + + + HF       F   L        
Sbjct: 86  TLLSGEKVVNRVAILEDSLVYHLP--QALFDQLRSESRHFDKFFTRAFAKRLRHEARFKA 143

Query: 163 YNTLTGRRYPHVQVARPPAADARFSQADIDAVLARYNQVLDISRDDLESLIQQTELESYK 222
            +  T  R   +  + P   DA  S     A+L R ++V  +   D   L+     +  +
Sbjct: 144 KDLTTTSRISTLMSSSPIMIDAHASVTQA-ALLMRNSRVSSLLVTDNHKLVGILTDKDLR 202

Query: 223 RRL------GTLHCADIMSREPISVEFGTPLQEAWALMHERRIKALPITDRTR----RVV 272
            R+      G +     M+  PIS+     + EA  LM E  I  LPI D       + +
Sbjct: 203 NRVLAAGLDGRIAVHQAMTTSPISISSNALIFEAMLLMSEHNIHHLPIIDEQNTEEVKAI 262

Query: 273 GIVTQADFFR 282
           G+VT  D  R
Sbjct: 263 GMVTSTDILR 272