Pairwise Alignments

Query, 776 a.a., RNA polymerase sigma factor RpoD from Variovorax sp. SCN45

Subject, 616 a.a., RpoD family RNA polymerase sigma factor (RefSeq) from Shewanella loihica PV-4

 Score =  630 bits (1625), Expect = 0.0
 Identities = 335/622 (53%), Positives = 440/622 (70%), Gaps = 24/622 (3%)

Query: 162 RSRLKTLITLGKTRGYLTHGEISDHLPDKLVDAETMEVVVTMLNDMGVAVYEQTPDAETL 221
           +S+LK L+  GK +GYLT+ E++DHLP  +VD++ +E ++ M+NDMG+ VYEQ PDA+ +
Sbjct: 9   QSQLKLLLAKGKEQGYLTYAEVNDHLPADMVDSDQIEDIIQMINDMGIRVYEQAPDADEI 68

Query: 222 LLNNTAPTATTVEEAEEEAEAALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAK 281
           +++  +    T E+A EEA AAL+TV++E GRTTDPVRMYMREMGTVELLTREGEI IAK
Sbjct: 69  MMSEDS----TDEDAAEEAAAALATVEAELGRTTDPVRMYMREMGTVELLTREGEIVIAK 124

Query: 282 RIEGGLMAMMEAISASPATIAAILEMAATIREGKVVISTIVDGFSNPNEAD--------- 332
           RIE G+  +  +++  P  IA ILE        +V +S I+ GF +PN  D         
Sbjct: 125 RIEEGINTVQASVAEYPQAIAMILEQYDRYEAEEVRLSDIISGFVDPNAEDMAPTATHIG 184

Query: 333 DYVAEEDFDEFDEEDDDDGKGGSKALTKKLEELKRDALERFDRIASLFEKVHKIYDKEGY 392
             ++++D D+ D+E DD+   G +  + K  +   +A ERF ++    EK  K+ + +G 
Sbjct: 185 SELSDDDLDDEDDEGDDEDDDGDEEDSPKGPD-PEEARERFTQLREAHEKALKVIELKGR 243

Query: 393 GTPAYVKAQEAMSEELMTIRFTAKTIEKLCDLVRTQVDDVRKKERELRRIIVDKCGFPQE 452
             P    A   + E     R   K  ++L   +R  +D VR +ER + ++ V++   P++
Sbjct: 244 EHPEATAALFDIGEIFKEFRLVPKQFDRLVKNMREMMDKVRIQERLIMKLCVEQAKMPKK 303

Query: 453 EFIRDFSGFDKNGNVVASNLLNLKWVEKQAAAGKPWSAVLARNIPPVQELQQRLTDIQSR 512
            F++          V  SN  +++W  ++ AA KP++  L      VQ  + +L  I++ 
Sbjct: 304 NFVK----------VYTSNESSIEWFNEEIAAKKPYAEGLEMVAEDVQRCRAKLDAIENE 353

Query: 513 VVVPLTQLKDINKRMNEGESSSRDAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNI 572
             + +  +KDIN+RM+ GE+ +R AKKEM+EANLRLVISIAKKYTNRGLQFLDLIQEGNI
Sbjct: 354 TGLAIAAIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNI 413

Query: 573 GLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQH 632
           GLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK+NRISRQ 
Sbjct: 414 GLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQM 473

Query: 633 LQEFGFEPDAGILAAKMEIPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDSSNTA 692
           LQE G EP    LA +M +PEDKIRK++KIAKEPISMETPIGDD+DSHLGDFIED++   
Sbjct: 474 LQEMGREPSPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLEL 533

Query: 693 PIEAAMQAGLRDVVKDILDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQI 752
           P+++A    L++   ++L  LT REAKVLRMRFGI+M+TDHTLEEVGKQFDVTRERIRQI
Sbjct: 534 PLDSATGESLKNATHEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQI 593

Query: 753 EAKALRKLKHPSRSDKLRSFID 774
           EAKALRKL+HPSRS+ L+SF+D
Sbjct: 594 EAKALRKLRHPSRSEILKSFLD 615