Pairwise Alignments

Query, 681 a.a., DNA primase DnaG from Variovorax sp. SCN45

Subject, 647 a.a., DNA primase, catalytic core from Pseudomonas stutzeri RCH2

 Score =  420 bits (1080), Expect = e-122
 Identities = 230/509 (45%), Positives = 313/509 (61%), Gaps = 32/509 (6%)

Query: 9   IPASFIQELIARADVVEIVGRYVPLKKAGANFMGLCPFHGEKSPSFSVSPTKQFYHCFGC 68
           IP SFI +L+ R+D+VE+VG  + LKKAG N+  LCPFH EK+PSFSVSP KQFY+CFGC
Sbjct: 5   IPQSFIDDLLNRSDIVEVVGSRIQLKKAGKNYSALCPFHKEKTPSFSVSPDKQFYYCFGC 64

Query: 69  GVHGNAIGFLMEHAGMGFVEAVHDLADQYGLQVPEDDASPAERARAASQRQKQATLTDVL 128
           G  GNA+GF+M+H  + F +AV +LA + G++VP +D+    + R    +   + L  +L
Sbjct: 65  GAGGNALGFVMDHDQLDFPQAVEELAKRAGMEVPHEDSGRKHKPR----QPVDSPLYPLL 120

Query: 129 EKAGDAYRKHLRQAP---GAIEYLKGRGVSGEVAKQFGIGYAPAGWRALASVFPD--YDD 183
             A D YR+ L+  P    A+EYLKGRG+SG +A+ FG+G+AP GW  L           
Sbjct: 121 AAAADYYRQALKSHPTRKSAVEYLKGRGLSGVIARDFGLGFAPPGWDNLMKHLGGDALQQ 180

Query: 184 PLLTESGLVIVNNEEGKLSDEEAKRYDRFRDRVMFPIRNVKGECIGFGGRVLGDEKPKYL 243
             L ++GL+I N E GK       RYDRFRDRVMFPIR+ +G  I FGGRVLGD+KPKYL
Sbjct: 181 KALIDAGLLIENAENGK-------RYDRFRDRVMFPIRDSRGRVIAFGGRVLGDDKPKYL 233

Query: 244 NSPETPVFSKGRELYGLYEARAAFRDRGYALVTEGYMDVVALAQLGFPNAVATLGTACTS 303
           NSPETPVF KG+ELYGLYEAR   RD    +V EGYMDV+ALAQ G  NAVATLGTA + 
Sbjct: 234 NSPETPVFHKGQELYGLYEARQTNRDLDEIMVVEGYMDVIALAQQGLRNAVATLGTATSE 293

Query: 304 EHVQKLFRFTESVVFSFDGDAAGRRAARKALDGALPYATDVRSIKFLFLPAEHDPDSFIR 363
           EH+++LFR   SV+F FDGDAAGR+AA +AL+  LP   D R  +FLFLP   DPD+ +R
Sbjct: 294 EHLKRLFRIVPSVLFCFDGDAAGRKAAWRALEATLPNLQDGRRARFLFLPDGEDPDTLVR 353

Query: 364 EHGAEAF-ARFVTEATPLSRFMLEAAREGCDLTTAEGRAHMTSNVRPLWSAMPDGALKRQ 422
             G +AF AR    + PL+ +  +   +  D  + EG+AH+ +   PL   +P   L+  
Sbjct: 354 AEGTDAFRARIQQHSQPLADYFFQQLSDEADPRSLEGKAHLATLAAPLIEKIPGSNLRTL 413

Query: 423 LLSEIATLVQLDAPALSELWASTPGPRKAGGGALAAQRHNEPPMYTGG----DGDDYYPD 478
           +   +A +  L+  AL  + A+ P P        +   +++   Y  G    + D + P 
Sbjct: 414 MRQRLAEITGLNGEALQHM-AAAPAPSPGN----STPEYDDSAYYETGAHYAETDYFEPP 468

Query: 479 MPPPQ------DYEPPRYESDSKPKFQPQ 501
             P Q      +++    +S  +P F+P+
Sbjct: 469 ETPKQQRSGKKEWKKDWKKSGQRPDFKPR 497