Pairwise Alignments

Query, 655 a.a., Excinuclease ABC subunit C from Variovorax sp. SCN45

Subject, 610 a.a., excinuclease ABC subunit C from Vibrio cholerae E7946 ATCC 55056

 Score =  473 bits (1218), Expect = e-138
 Identities = 271/646 (41%), Positives = 389/646 (60%), Gaps = 66/646 (10%)

Query: 20  PGVYRYFDAAGAVLYVGKARNLRKRVANYFQKNHGGTRIGHMISKIVRMETTVVRSEAEA 79
           PGVYR ++A   V+YVGKA++L+KR+ +YF+KN    +   ++S I +++ TV  +E EA
Sbjct: 18  PGVYRMYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALVSNIAKIDVTVTHTETEA 77

Query: 80  LLLENNLIKTLKPRYNILFRDDKSYPYLKIASHQFPRLAYYRGAVDKKHRYFGPYPSAWA 139
           L+LE+N IK   P+YN+L RDDKSYPY+ +++H+ PRL+ +RGA  ++  YFGPYP + A
Sbjct: 78  LILEHNYIKQYLPKYNVLLRDDKSYPYIFLSAHKHPRLSSHRGAKKRRGEYFGPYPDSGA 137

Query: 140 VKESIQLLQKVFRLRTCEDTVYANRTRPCLLYQIKRCSGPCV-GHIAPDAYAQDVASAEA 198
           V+E++ L+QK+F +R CEDTVY+NRTRPCL+YQI RC+GPCV G I+   Y + V     
Sbjct: 138 VRETLHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVKGLISDQGYQEIVHYLRL 197

Query: 199 FLMGDTQLVLSKLEQRMMTHAEKLEFEQAAELRNQMSAISRVLHQQSIEIASDKDVDILA 258
           FL G    VLS L ++M   + +L FE AA+ R+Q+ AI RV  QQ +   S +D+D+L 
Sbjct: 198 FLQGKDNQVLSILVEKMEQASRELRFEDAAKARDQIQAIRRVQEQQFVSDDSLEDLDVLG 257

Query: 259 VKVQGGKACVNLAMVRGGRHLGDRPYFPVHVEDAVQIHHGELDGDEGDDAGPAAADPIEV 318
              + G AC+++ M+R G+ LG R +FP                          +D  +V
Sbjct: 258 FAQENGIACIHILMIRQGKVLGSRSHFP-----------------------KIPSDTSQV 294

Query: 319 QVLEAFIAQHYID----VPVPATLVLSQQVSRE---LIEAISQQAGSRVTAVFQPREQRR 371
           +V E+F++Q+Y+       +PA ++L++ ++ E   L  AIS+ AG +VT    P   R 
Sbjct: 295 EVFESFLSQYYLSHSEARSIPARIILNRGLTEETEALQIAISELAGRKVTFHVNPTGTRG 354

Query: 372 HWLEMAETNAGLQLARLLAEEGSQQARTRALTDALELASDDLDTFRVECFDISHTAGEAT 431
            +L++A TNA   +   +  + +   R +AL +  EL  D +   R+ECFDISHT GE+T
Sbjct: 355 RYLKLANTNALTAITTKMNHKMTISQRFKALQE--ELGMDAIT--RMECFDISHTMGEST 410

Query: 432 QASCVVFEHHAMQNKEYRRYNIEGITPGDDYAAMRQVLHRRYGKLAEAMAAETDALPPGD 491
            ASCVVF       +EYRRYNI GIT GDDYAAM QVL RRY K  +             
Sbjct: 411 MASCVVFNQEGPLKQEYRRYNITGITGGDDYAAMAQVLERRYSKQLD------------- 457

Query: 492 AESESADAPPKPRTARMPDLVLVDGGKGQVSMAREVFGELGL---PLSLIVGVEKGEGRK 548
                        ++++PD++ +DGGKGQ++ A E+             I+G+ KG  RK
Sbjct: 458 -------------SSKIPDIIFIDGGKGQLNRAYEIISSCWQDWPKYPKIIGIAKGVTRK 504

Query: 549 VGLEELVFADGREKVYLGKDSAALMLVAQIRDEAHRFAITGMRAKRAKVRVGGSQLEDIP 608
            GLE L+  DG ++ +L  D+ AL L+  IRDE+H  AI G RA+R K R   S LE I 
Sbjct: 505 PGLETLITIDG-DEFHLPSDAPALHLIQHIRDESHNHAIAGHRAQRGKTR-RTSTLEGIE 562

Query: 609 GIGPKRRARLLQRFGGIRGVAAASVEDIASVEGIASDLAEEIYKAL 654
           G+GPKRR  LL+  GG++ +  ASVE+IA V GI+  LAE IY+AL
Sbjct: 563 GVGPKRRQALLKYLGGMQELKRASVEEIAKVPGISHALAENIYQAL 608