Pairwise Alignments

Query, 655 a.a., Excinuclease ABC subunit C from Variovorax sp. SCN45

Subject, 527 a.a., excinuclease ABC subunit UvrC from Methanococcus maripaludis S2

 Score =  271 bits (694), Expect = 4e-77
 Identities = 179/596 (30%), Positives = 299/596 (50%), Gaps = 88/596 (14%)

Query: 13  VAALPQLPGVYRYFDAAGAVLYVGKARNLRKRVANYFQKNHGGTRIGHMISKIVRMETTV 72
           ++ +P+ PG Y Y + +G V+YVGKA+NL+KRV++YF K +   +   ++  I  ME  V
Sbjct: 4   ISDIPKNPGCYIYKNESGTVIYVGKAKNLKKRVSSYFNKKNHDPKTEKLVKSIYEMEFIV 63

Query: 73  VRSEAEALLLENNLIKTLKPRYNILFRDDKSYPYLKIASHQFPRLAYYRGAVDKKHRYFG 132
             +E EAL+LEN LIK   P+YNI  +D K+Y Y+ I+   FPR+   R    KK +++G
Sbjct: 64  TDNEVEALILENTLIKKYSPKYNIDLKDSKNYAYIYISEENFPRIGISRNK-SKKGKFYG 122

Query: 133 PYPSAWAVKESIQLLQKVFRLRTCEDTVYANRTRPCLLYQIKRCSGPCVGHIAPDAYAQD 192
           P+ SA      + +L+K F++R+C++       RPCL + IK C+ PC G I    Y   
Sbjct: 123 PFTSAKERDYVLDVLKKTFKIRSCKNM----HKRPCLRHHIKNCTAPCSGDITSKDYLNQ 178

Query: 193 VASAEAFLMGDTQLVLSKLEQRMMTHAEKLEFEQAAELRNQMSAISRVLHQQSIEIASDK 252
           +  AE  L G+   ++ +L+  M   ++ L+FE+A  +R +++AI R+  +Q+++     
Sbjct: 179 IKKAEHILKGNIDSLIHELKNEMNEKSKNLQFEEALLIREEINAIERLKTRQNVKRDVKY 238

Query: 253 DVDILAVKVQGGKACVNLAMVRGGRHLGDRPYFPVHVEDAVQIHHGELDGDEGDDAGPAA 312
           + D++++  + GK  + +  V  G  L DR YF             E D  E        
Sbjct: 239 NEDVISILEKSGKLHIMVFNVLKGT-LFDRKYF-------------EFDYTE-------- 276

Query: 313 ADPIEVQVLEAFIAQHYIDVPVPATLVLS-----------QQVSRELIEAISQQAGSRVT 361
                    E F+ Q+Y +  VP+ +++S           +  S  L+E +S++ GS+V 
Sbjct: 277 ------NFFEEFLIQYYSENDVPSEIIISELPKNLEEDNNEYSSDALLEYLSKKKGSKVA 330

Query: 362 AVFQPREQRRHWLEMAETNAGLQLARLLAEEGSQQARTRALTDALELASDDLDTFRVECF 421
                + +++  L++A  N  + +          + + ++L + L L   D     +ECF
Sbjct: 331 FKIPKQGEKKQLLDLAIKNLEIYV-------NGNEIKVQSLKNKLML---DKSPNIIECF 380

Query: 422 DISHTAGEATQASCVVFEHHAMQNKEYRRYNIEGITPGDDYAAMRQVLHRRYGKLAEAMA 481
           DISH +G +T  S V F +     K YRR+ I+ ++  DD+ ++ +V+ RRY KL E   
Sbjct: 381 DISHLSGTSTVGSVVQFRNGKPDKKNYRRFKIKTVSGIDDFKSISEVVFRRYSKLLE--- 437

Query: 482 AETDALPPGDAESESADAPPKPRTARMPDLVLVDGGKGQVSMAREVFGELGLPLSLIVGV 541
                                     +PDL+++DGGKGQ+S A     +L L + LI   
Sbjct: 438 ----------------------ENLELPDLIIIDGGKGQLSSAFSELRKLKLKIPLISIA 475

Query: 542 EKGEGRKVGLEELVFADGREK-VYLGKDSAALMLVAQIRDEAHRFAITGMRAKRAK 596
           ++        EE ++  G E  + + K+  A + + +IRDEAHRFAI   R  R K
Sbjct: 476 KR--------EEEIYTPGIENPLPIKKNEKASLFIQEIRDEAHRFAINYNRLLRKK 523