Pairwise Alignments

Query, 361 a.a., D-malate dehydrogenase [decarboxylating] (EC 1.1.1.83) from Variovorax sp. SCN45

Subject, 364 a.a., 3-isopropylmalate dehydrogenase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  193 bits (490), Expect = 7e-54
 Identities = 145/367 (39%), Positives = 205/367 (55%), Gaps = 20/367 (5%)

Query: 5   RIAVIAGDGIGKETMPEGLRVLEAAATRFGIDLKFDHFDFSSWDYYEKHGQMLPDNWKDQ 64
           +IAV+AGDGIG E M E  +VL+A   RFG+++++  +D       + HG  LP+     
Sbjct: 4   QIAVLAGDGIGPEVMAEARKVLKAVEARFGLNIEYTEYDVGGIAI-DNHGCPLPEATLKG 62

Query: 65  IGGHDAIFFGAVGWP--EKIPDHVSLW-GSLLMFRREFDQYINLRPARLMPGI--IAPVV 119
               DAI FG+VG P  EK+P +     G+LL  R  F+ + NLRPA+L  G+  ++P+ 
Sbjct: 63  CEAADAILFGSVGGPKWEKLPPNEQPERGALLPLRGHFELFCNLRPAKLHDGLEHMSPL- 121

Query: 120 RRDGTPREPGEIDMYIVRENTEGEY-SSIGGRMYQGTPREIVVQETVMSRVGVDRVLKFA 178
           R D + R     D+  VRE T G Y     GR  +G   E        SR  + R+ + A
Sbjct: 122 RSDISARG---FDVLCVRELTGGIYFGKPKGRQGEGESEE-AFDTMRYSRREISRIARIA 177

Query: 179 FELAQSRPKKHLTSATKSNGISITMPYWDERVAEMGKSYPGITLDKFHIDILTAHFVQRP 238
           FE A+ R KK +TS  K+N ++ ++  W + V E+   +P + L+  +ID  T   ++RP
Sbjct: 178 FEAARGRRKK-VTSVDKANVLACSV-LWRQVVEEVAVDFPDVELEHIYIDNATMQLLRRP 235

Query: 239 DFFDVVVASNLFGDILSDLGPACTGTIGIAPSANLNPERTTPSLFEPVHGSAPDIAGKGI 298
           D FDV++ SNLFGDILSD     TG++G+  SA++N   T   LFEP  GSAPDIAGKGI
Sbjct: 236 DEFDVMLCSNLFGDILSDEIAMLTGSMGLLSSASMN--STGFGLFEPAGGSAPDIAGKGI 293

Query: 299 ANPIGQIWCGAMMLEF-LGHKQAHDAILSTIEKVL--APQSGAPRTPDIGGKASTS-DLG 354
           ANPI QI   A+ML   L  ++A  AI   + K L     +G   + D   KA T+  +G
Sbjct: 294 ANPIAQILSAALMLRHSLKQEEAASAIERAVTKALNSGYLTGELLSSDQRHKAKTTVQMG 353

Query: 355 KAIAAAL 361
             IA A+
Sbjct: 354 DFIADAV 360