Pairwise Alignments

Query, 348 a.a., RNA polymerase sigma factor RpoS from Variovorax sp. SCN45

Subject, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

 Score =  224 bits (570), Expect = 3e-63
 Identities = 140/329 (42%), Positives = 186/329 (56%), Gaps = 25/329 (7%)

Query: 35  QNFPSLEAAADALAANAALPNGAMAELIGGEGA---------------DALTIYLRQVRR 79
           + F   + A + L  +A L +    EL+  EGA               DA  +YL ++  
Sbjct: 11  EEFDFEDEALEVLETDAELTSDE--ELVAVEGASEDVREEFDASAKSLDATQMYLSEIGF 68

Query: 80  TELFTPAEEYQAACAARAGDFAARQSMIEHNLRLVVSIAKGYLGRGVPMSDLIEEGNLGL 139
           + L T  EE   A  A  GD AAR+ MIE NLRLVV I++ Y  RG+ + DLIEEGNLGL
Sbjct: 69  SPLLTAEEEVLYARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGL 128

Query: 140 MHAITKFEPERGFRFSTYATWWIRQSVERAVMTQARAIRLPVHVVRELQQVLRARRTLEG 199
           + A+ KF+PERGFRFSTYATWWIRQ++ERA+M Q R IRLP+HVV+EL   LR  R L  
Sbjct: 129 IRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVVKELNIYLRTAREL-- 186

Query: 200 DAEFLAHRPDGVRVEDIAALLGRDVQAVADLLALAEAPRSLDAGDARGDDGFTLADTVAS 259
            ++ L H P     E+IA  L R V  V  +L L E   S+D     G DG      +  
Sbjct: 187 -SQRLDHEP---TPEEIALELDRPVDDVTKMLRLNERISSVDT--PIGGDGDKALLDILP 240

Query: 260 DDEQSSPSGATHAHEVERLLDQWVHALDAREREVLEGRYGLHDREPETLEVLSVRLGLTR 319
           D   + P  +T   ++   L  W+  L+ +++EVL  R+GL   EP TLE +   + LTR
Sbjct: 241 DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTR 300

Query: 320 ERVRQIQNEALAKMRRQLARSGVGRDALF 348
           ERVRQIQ E L ++R  L + G+  +ALF
Sbjct: 301 ERVRQIQVEGLRRLREILVKQGLNMEALF 329