Pairwise Alignments

Query, 348 a.a., RNA polymerase sigma factor RpoS from Variovorax sp. SCN45

Subject, 969 a.a., DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)-like protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  144 bits (362), Expect = 1e-38
 Identities = 83/234 (35%), Positives = 138/234 (58%), Gaps = 17/234 (7%)

Query: 101 AARQSMIEHNLRLVVSIAKGYLGRGVPMSDLIEEGNLGLMHAITKFEPERGFRFSTYATW 160
           AAR  MI  NLRLV+S+A  YLGRG+ ++DL++EGN+GLM A+ KF+  +GF+FSTYATW
Sbjct: 732 AARDEMITFNLRLVLSVANKYLGRGLELADLVQEGNIGLMKAVEKFDHRKGFKFSTYATW 791

Query: 161 WIRQSVERAVMTQARAIRLPVHVVRELQQVLRARRTLEGDAEFLAHR-PDGVRVEDIAAL 219
           WIRQ++ RA+  QAR IR+PVHV   L +++ A       ++ L H+   G ++ +++ +
Sbjct: 792 WIRQAITRAIADQARIIRIPVHVNESLNKLISA-------SKVLTHKFGRGPKISELSLI 844

Query: 220 LGRDVQAVADLLALAEAPRSLDAGDARGDDGFTLADTVASDDEQSSPSGATHAHEVERLL 279
           L      V +L  +       +A      +G+     ++ ++E       T+  ++    
Sbjct: 845 LSMPETKVENLKQILVMEPVAEAD--HNTNGYVDWAAMSPEEEIIDDDRDTNIKDL---- 898

Query: 280 DQWVHALDAREREVLEGRYGLHDREPETLEVLSVRLGLTRERVRQIQNEALAKM 333
              +  L  +E++VLE R+G++     TLE +  +  +TRER+RQI+ ++L K+
Sbjct: 899 ---LKGLTDKEKKVLELRFGINAATELTLEEVGQQFDVTRERIRQIEAKSLKKL 949