Pairwise Alignments

Query, 348 a.a., RNA polymerase sigma factor RpoS from Variovorax sp. SCN45

Subject, 298 a.a., RNA polymerase sigma-32 factor RpoH from Phaeobacter inhibens DSM 17395

 Score =  124 bits (312), Expect = 2e-33
 Identities = 90/274 (32%), Positives = 147/274 (53%), Gaps = 10/274 (3%)

Query: 70  LTIYLRQVRRTELFTPAEEYQAACA-ARAGDFAARQSMIEHNLRLVVSIAKGYLGRGVPM 128
           L  YL+++R+  L  P EEY  A       D A+   M+  +LRL   IA GY G G+P 
Sbjct: 16  LNRYLQEIRKFPLLEPEEEYMLAKRWVEEQDSASAHKMVTSHLRLAAKIAMGYRGYGLPQ 75

Query: 129 SDLIEEGNLGLMHAITKFEPERGFRFSTYATWWIRQSVERAVMTQARAIRL-PVHVVREL 187
           +++I E N+GLM A+ +F+PE+GFR +TYA WWIR S++  ++     ++L      ++L
Sbjct: 76  AEVISEANVGLMQAVKRFDPEKGFRLATYAMWWIRASIQEYILRSWSLVKLGTTSAQKKL 135

Query: 188 QQVLRARRTLEGDAEFLAHRPDGVRVEDIAALLG-RDVQAVADLLALAEAPRSLDAG-DA 245
              LR  +   G  E     PD V+   IA  LG  + + ++    ++    SL+A   +
Sbjct: 136 FFNLRKAKARIGALEEGDLHPDSVK--KIATDLGVTETEVISMNRRMSGGDASLNATVGS 193

Query: 246 RGDDGFTLADTVASDD-EQSSPSGATHAHEVER-LLDQWVHALDAREREVLEGRYGLHDR 303
            G+      D +  +D +Q+    A    E  R LL   +  L+ RE+++L  R  L D 
Sbjct: 194 EGEGTMQWQDWLEDEDADQAGDYEARDELEARRELLASALEVLNDREKDILTQR-RLAD- 251

Query: 304 EPETLEVLSVRLGLTRERVRQIQNEALAKMRRQL 337
           + +TLE LS + G++RER+RQI+  A  K+++++
Sbjct: 252 QAKTLEDLSTQYGVSRERIRQIEVRAFEKLQKKM 285