Pairwise Alignments

Query, 348 a.a., RNA polymerase sigma factor RpoS from Variovorax sp. SCN45

Subject, 326 a.a., RNA polymerase, sigma 38 subunit, RpoS (RefSeq) from Shewanella sp. ANA-3

 Score =  217 bits (553), Expect = 3e-61
 Identities = 129/281 (45%), Positives = 171/281 (60%), Gaps = 8/281 (2%)

Query: 68  DALTIYLRQVRRTELFTPAEEYQAACAARAGDFAARQSMIEHNLRLVVSIAKGYLGRGVP 127
           DA  +YL ++  + L +  EE   +  A  G   +R  MIE NLRLVV IA+ Y  RG+ 
Sbjct: 52  DATQLYLGEIGFSPLLSAEEEVYFSRKALKGCEKSRNRMIESNLRLVVKIARRYNNRGLA 111

Query: 128 MSDLIEEGNLGLMHAITKFEPERGFRFSTYATWWIRQSVERAVMTQARAIRLPVHVVREL 187
           + DLIEEGNLGL+ A+ KF+PERGFRFSTYATWWIRQ++ERA+M Q R IRLP+HVV+EL
Sbjct: 112 LLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKEL 171

Query: 188 QQVLRARRTLEGDAEFLAHRPDGVRVEDIAALLGRDVQAVADLLALAEAPRSLDAGDARG 247
              LR  R L   A+ L H P     E+IA  L      V+ +L L E   S+D     G
Sbjct: 172 NVYLRTAREL---AQKLDHEP---TAEEIAEKLQVSSVDVSRMLKLNEKITSVDI-PLGG 224

Query: 248 DDGFTLADTVASDDEQSSPSGATHAHEVERLLDQWVHALDAREREVLEGRYGLHDREPET 307
           D+   L D +A DD+   P       ++   + +W++ L+ ++REVL  R+GL   EP T
Sbjct: 225 DNDKALLDVLA-DDDNVGPDYKVQDEDISNSVVKWLNELNTKQREVLARRFGLLGYEPST 283

Query: 308 LEVLSVRLGLTRERVRQIQNEALAKMRRQLARSGVGRDALF 348
           LE +   +GLTRERVRQIQ EAL ++R  L   G+  +ALF
Sbjct: 284 LEDVGAEIGLTRERVRQIQVEALKRLRDLLGAQGLSVEALF 324