Pairwise Alignments

Query, 478 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) from Variovorax sp. SCN45

Subject, 431 a.a., 23S rRNA (uracil-5-)-methyltransferase RumA from Dechlorosoma suillum PS

 Score =  439 bits (1128), Expect = e-127
 Identities = 239/458 (52%), Positives = 300/458 (65%), Gaps = 34/458 (7%)

Query: 20  QVESLDLDAQGVSHKADGMVVFIEGALPFEEVQFNVHRRKNNWEQGTVTAIRRESSQRVR 79
           ++ESLD DA+GV+ + +G  VF+EGALP E V++ + R K N+  G V+A+ R S  RV 
Sbjct: 5   KIESLDHDARGVT-RLEGKTVFVEGALPGETVEYALFREKPNYAVGEVSAVLRPSCARVP 63

Query: 80  PGCPHFGLHTGACGGCKMQHLDAAAQVAVKQRALEDNLWHLGKVKPENLLRPLEGPAWHY 139
           P CPHFG     CGGC MQHL+  AQVA KQR LE+NLWHL ++KPE +  P+ GP W Y
Sbjct: 64  PRCPHFG----TCGGCSMQHLEPTAQVAAKQRLLENNLWHLARLKPEQVYNPIYGPTWGY 119

Query: 140 RYRARLSVRHVVKKGTVLIGFHERKSRYLADMQVCPVLPKQVSEMLMPLRALIGSLDARD 199
           R+RARL+VR V  KG +L+GFHE++S Y+AD+  CP+LP  VS++L+PLR L   L  RD
Sbjct: 120 RHRARLTVRMVESKG-MLVGFHEKRSSYVADLHTCPILPAHVSDLLVPLRQLFVRLSIRD 178

Query: 200 TCPQIELACGDAPDSTKLGTIALVLRHLEPLSRADIDRLKAFAAENEGVQWWLQAKGPDT 259
             PQ+E+A G+           +VLR LEPLS AD   L+AFA E+ G+ ++LQ KGP +
Sbjct: 179 RLPQVEIAVGEK-------CTVMVLRILEPLSGADEKLLRAFADEH-GIVFFLQPKGPAS 230

Query: 260 V-KLLEEGGSPLSYRLPEFGVTMPFKPTDFTQVNPHINRALVGKALRLLDVQPDERVIDW 318
             +     G  LSY LPEFG+ M F PT+FTQVNP IN+ L+ +A+RLLD QP ER+ D 
Sbjct: 231 AYRFHPVDGPDLSYLLPEFGLEMRFSPTEFTQVNPGINQMLIRRAMRLLDPQPGERIADL 290

Query: 319 FCGLGNFTLPLASQAREVLGIEGSDTLVARATANYGTNQPATSARRELSPAKFVARNLFE 378
           FCGLGNFTLP+A     V+G+EG   L  RA  N   N  A +         F   NLFE
Sbjct: 291 FCGLGNFTLPIARSGARVVGVEGLKELTRRAEENAAANGLAAN-------VSFGVANLFE 343

Query: 379 MTPAMLVEDGSADKWLVDPPREGAFALAKAMADLHQQPELCTDGWTPPKRIVYVSCNPST 438
            TP  L   G  DK L+DPPREGA  + KA+            G   P RIVYVSCNPST
Sbjct: 344 CTPKSLGALGHFDKMLIDPPREGAVEVVKAL------------GEDSPGRIVYVSCNPST 391

Query: 439 LARDAGLLVHQAGYRCTFAGVVNMFPHTAHVESIAVFE 476
           LARDA +LVHQ GYR + AG+VNMFPHT+HVESIA+FE
Sbjct: 392 LARDAAILVHQKGYRFSGAGIVNMFPHTSHVESIALFE 429